RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ADAMTS5Q9UNA0 930 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 CAPN15O75808 1086 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 STAG3L1P0CL83 205 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PLS3P13797 630 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PSMC6P62333 389 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 LIN9Q5TKA1 542 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 VSIG10LQ86VR7 867 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 SECISBP2LQ93073 1101 aaKnown RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 PDE11AQ9HCR9 933 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 ATP2A2P16615 1042 aaKnown RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 ITGB5P18084 799 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 CTCFP49711 727 aaPredicted RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 MYO1EQ12965 1108 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PKN2Q16513 984 aaKnown RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 EXOC3L4Q17RC7 722 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 MUM1L1Q5H9M0 696 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 ABRAQ8N0Z2 381 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 TSNARE1Q96NA8 513 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 FAM49AQ9H0Q0 323 aaPredicted RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.22□□□□□ -1.09
USP54-210ENST00000466048 GABBR1Q9UBS5 961 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PARP2Q9UGN5 583 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 PLAGL2Q9UPG8 496 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 SIK3Q9Y2K2 1263 aa8.22□□□□□ -1.09
USP54-210ENST00000466048 TCP1P17987 556 aaKnown RBP8.21□□□□□ -1.09
USP54-210ENST00000466048 CTNNA2P26232 953 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 YWHABP31946 246 aaKnown RBP8.21□□□□□ -1.09
USP54-210ENST00000466048 AP3M2P53677 418 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 MAP2K5Q13163 448 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 PTPN21Q16825 1174 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 KCNK9Q9NPC2 374 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 FAM114A2Q9NRY5 505 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 C1orf112Q9NSG2 853 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 HESX1Q9UBX0 185 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 UTP11Q9Y3A2 253 aaKnown RBP8.21□□□□□ -1.09
USP54-210ENST00000466048 IRF6O14896 467 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 CEP104O60308 925 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 GFPT2O94808 682 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 MARK3P27448 753 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 RFC1P35251 1148 aaPredicted RBP8.21□□□□□ -1.09
USP54-210ENST00000466048 KCNH2Q12809 1159 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 B3GNT9Q6UX72 402 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 SLC30A10Q6XR72 485 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 TRIM58Q8NG06 486 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 RPF1Q9H9Y2 349 aaKnown RBP8.21□□□□□ -1.09
USP54-210ENST00000466048 AAASQ9NRG9 546 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 KLHL14Q9P2G3 628 aa8.21□□□□□ -1.09
USP54-210ENST00000466048 MAPK13O15264 365 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 P4HA2O15460 535 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 CREB3O43889 395 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 EGFRP00533 1210 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 PPM1FP49593 454 aaPredicted RBP8.21□□□□□ -1.1
USP54-210ENST00000466048 CLCN6P51797 869 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 SWSAP1Q6NVH7 229 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 ZNF720Q7Z2F6 126 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 SLC9A9Q8IVB4 645 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 MTG1Q9BT17 334 aaPredicted RBP8.21□□□□□ -1.1
USP54-210ENST00000466048 TTYH3Q9C0H2 523 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 ST6GALNAC4Q9H4F1 302 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 FBXL5Q9UKA1 691 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 MROH7Q68CQ1 1323 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 DICER1Q9UPY3 1922 aaKnown RBP8.21□□□□□ -1.1
USP54-210ENST00000466048 ANO9A1A5B4 782 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 ADCY3O60266 1144 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 KRT19P08727 400 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 MYBP10242 640 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 TAL1P17542 331 aaPredicted RBP8.21□□□□□ -1.1
USP54-210ENST00000466048 TRIM65Q6PJ69 517 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 PHIPQ8WWQ0 1821 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 IFIH1Q9BYX4 1025 aaKnown RBP8.21□□□□□ -1.1
USP54-210ENST00000466048 CREBZFQ9NS37 354 aa8.21□□□□□ -1.1
USP54-210ENST00000466048 USP2O75604 605 aaPredicted RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 NFX1Q12986 1120 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 PDCD2Q16342 344 aaPredicted RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 VPS52Q8N1B4 723 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 ARHGEF2Q92974 986 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 CALR3Q96L12 384 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 TSC22D3Q99576 134 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 APOL6Q9BWW8 343 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 MRPL4Q9BYD3 311 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 SCOCQ9UIL1 159 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 CSPG5O95196 566 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 ELF1P32519 619 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 MAGEA1P43355 309 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 FAM43BQ6ZT52 329 aaPredicted RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 C12orf56Q8IXR9 622 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 INPP4AQ96PE3 977 aaPredicted RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 CXorf56Q9H5V9 222 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 CYP39A1Q9NYL5 469 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 DIS3Q9Y2L1 958 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 ASTN2O75129 1339 aaPredicted RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 ZNF233A6NK53 670 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 TRAPPC3O43617 180 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 PARNO95453 639 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 POLR2FP61218 127 aaKnown RBP8.2□□□□□ -1.1
USP54-210ENST00000466048 ENPEPQ07075 957 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 KLHL30Q0D2K2 578 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 RAPGEF1Q13905 1077 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 FBXO38Q6PIJ6 1188 aa8.2□□□□□ -1.1
USP54-210ENST00000466048 CCDC197Q8NCU1 140 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms