RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 IGSF9Q9P2J2 1179 aa17.81■□□□□ 0.44
COL7A1-204ENST00000462475 USP20Q9Y2K6 914 aa17.81■□□□□ 0.44
COL7A1-204ENST00000462475 TDRD15B5MCY1 1934 aaKnown RBP17.8■□□□□ 0.44
COL7A1-204ENST00000462475 SF3B1O75533 1304 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-204ENST00000462475 CASTOR2A6NHX0 329 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PTGESO14684 152 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PI15O43692 258 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 KIF4AO95239 1232 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PAPLNO95428 1278 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 OR52Z1P0C646 297 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 TUSC3Q13454 348 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 SAFBQ15424 915 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-204ENST00000462475 LILRA6Q6PI73 481 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PADI6Q6TGC4 694 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PRSS55Q6UWB4 352 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-204ENST00000462475 GPR65Q8IYL9 337 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 SIX5Q8N196 739 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 HDAC7Q8WUI4 952 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 NACC1Q96RE7 527 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 CCDC113Q9H0I3 377 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 NT5C3AQ9H0P0 336 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PLEKHA4Q9H4M7 779 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PPP4R2Q9NY27 417 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 SNTG2Q9NY99 539 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 FNIP2Q9P278 1114 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 EPS15L1Q9UBC2 864 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 FBXL21Q9UKT6 434 aa17.8■□□□□ 0.44
COL7A1-204ENST00000462475 PROB1E7EW31 1015 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 N4BP3O15049 544 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 TADA2AO75478 443 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 RECQL4O94761 1208 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 SEC24BO95487 1268 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 PRKCBP05771 671 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 AOC1P19801 751 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 PRPF4BQ13523 1007 aaKnown RBP17.79■□□□□ 0.44
COL7A1-204ENST00000462475 ZNF174Q15697 407 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 TMEM132AQ24JP5 1023 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 EEF1DP3Q658K8 133 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 CCDC83Q8IWF9 413 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 C8orf76Q96K31 380 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 KIFC3Q9BVG8 833 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 C2orf40Q9H1Z8 148 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 PIDD1Q9HB75 910 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 ZDHHC7Q9NXF8 308 aa17.79■□□□□ 0.44
COL7A1-204ENST00000462475 ARHGEF35A5YM69 484 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 C1RP00736 705 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 CFHP08603 1231 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 LIG1P18858 919 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 CYP11B2P19099 503 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 RPA1P27694 616 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 NBL1P41271 181 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 CREMQ03060 361 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 NAB2Q15742 525 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 MAPK6Q16659 721 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 GET4Q7L5D6 327 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-204ENST00000462475 ASCL5Q7RTU5 278 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 NOSTRINQ8IVI9 506 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 ERMNQ8TAM6 284 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 PRKD2Q9BZL6 878 aa17.78■□□□□ 0.44
COL7A1-204ENST00000462475 ZMYND10O75800 440 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 NAMPTP43490 491 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 ECM1Q16610 540 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 TTC38Q5R3I4 469 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 FAM171A1Q5VUB5 890 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 ST13P5Q8NFI4 369 aaPredicted RBP17.77■□□□□ 0.44
COL7A1-204ENST00000462475 DEPTORQ8TB45 409 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 TTPALQ9BTX7 342 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 POLD4Q9HCU8 107 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 FBXW11Q9UKB1 542 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 LIMCH1Q9UPQ0 1083 aa17.77■□□□□ 0.44
COL7A1-204ENST00000462475 KRBA1A5PL33 1030 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 ACKR2O00590 384 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 THP07101 528 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 ORC2Q13416 577 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-204ENST00000462475 NBR1Q14596 966 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 PSMD5Q16401 504 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 FRMD5Q7Z6J6 570 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 CEP57Q86XR8 500 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 CCDC105Q8IYK2 499 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 SLC44A3Q8N4M1 653 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 LNX1Q8TBB1 728 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-204ENST00000462475 PIK3R5Q8WYR1 880 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 CLSTN3Q9BQT9 956 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 ADPGKQ9BRR6 497 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 FOXP1Q9H334 677 aaPredicted RBP17.76■□□□□ 0.43
COL7A1-204ENST00000462475 GDAQ9Y2T3 454 aa17.76■□□□□ 0.43
COL7A1-204ENST00000462475 PRR23AA6NEV1 266 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 ADAM12O43184 909 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 LAMP2P13473 410 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 IGFBP6P24592 240 aaPredicted RBP17.75■□□□□ 0.43
COL7A1-204ENST00000462475 HAUS3Q68CZ6 603 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 FBXO18Q8NFZ0 1043 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 RTP3Q9BQQ7 232 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 LLPHQ9BRT6 129 aaKnown RBP17.75■□□□□ 0.43
COL7A1-204ENST00000462475 BHMT2Q9H2M3 363 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.75■□□□□ 0.43
COL7A1-204ENST00000462475 WNT16Q9UBV4 365 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 CA14Q9ULX7 337 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 DOCK8Q8NF50 2099 aa17.75■□□□□ 0.43
COL7A1-204ENST00000462475 SRFP11831 508 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms