RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 FBXO40Q9UH90 709 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 CNPY2Q9Y2B0 182 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 RIPK3Q9Y572 518 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 LTBP2Q14767 1821 aa8.56□□□□□ -1.04
USP54-208ENST00000461520 COL11A1P12107 1806 aaPredicted RBP8.55□□□□□ -1.04
USP54-208ENST00000461520 TSPY2A6NKD2 308 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 TMEM232C9JQI7 657 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 FOXP2O15409 715 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 PLA2G6O60733 806 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 VAV1P15498 845 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 ADCYAP1R1P41586 468 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 STAT2P52630 851 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 PMS1P54277 932 aaKnown RBP8.55□□□□□ -1.04
USP54-208ENST00000461520 PDE1AP54750 535 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 LCE4AQ5TA78 99 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 FAM160B2Q86V87 743 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 PPFIBP1Q86W92 1011 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 ANKRD35Q8N283 1001 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 CHST13Q8NET6 341 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 CHURC1Q8WUH1 139 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 FCRL2Q96LA5 508 aaPredicted RBP8.55□□□□□ -1.04
USP54-208ENST00000461520 CDADC1Q9BWV3 514 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 RAVER2Q9HCJ3 691 aaKnown RBP8.55□□□□□ -1.04
USP54-208ENST00000461520 ANAPC4Q9UJX5 808 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 STX8Q9UNK0 236 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 ATP11BQ9Y2G3 1177 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP54-208ENST00000461520 VCANP13611 3396 aa8.55□□□□□ -1.04
USP54-208ENST00000461520 OR14I1A6ND48 311 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 FADS2P1A8MWK0 482 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 ZNF205O95201 554 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 SNAI1O95863 264 aaPredicted RBP8.54□□□□□ -1.04
USP54-208ENST00000461520 TP53P04637 393 aaPredicted RBP8.54□□□□□ -1.04
USP54-208ENST00000461520 FGRP09769 529 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 SLC1A4P43007 532 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 NOVP48745 357 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 LINC00310P59036 64 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 ALX1Q15699 326 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 TRIM60Q495X7 471 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 MCMDC2Q4G0Z9 681 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 AXDND1Q5T1B0 1012 aaPredicted RBP8.54□□□□□ -1.04
USP54-208ENST00000461520 UNC5AQ6ZN44 842 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 CCDC81Q6ZN84 652 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 CCDC129Q6ZRS4 1044 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 STAG1Q8WVM7 1258 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 TM9SF2Q99805 663 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 DSCC1Q9BVC3 393 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 AP5S1Q9NUS5 200 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 ERVK13-1Q9NX77 482 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 TNFRSF10DQ9UBN6 386 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 FAM184BQ9ULE4 1060 aa8.54□□□□□ -1.04
USP54-208ENST00000461520 GPR55Q9Y2T6 319 aaPredicted RBP8.54□□□□□ -1.04
USP54-208ENST00000461520 DNAH12Q6ZR08 3092 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 TEX51A0A1B0GUA7 166 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 A0A1W2PQ45 241 aaPredicted RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 A0A1W2PQY0 241 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 SCAMP3O14828 347 aaKnown RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 ORC4O43929 436 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 DUSP11O75319 330 aaKnown RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 PGK1P00558 417 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 MCCP23508 829 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 IKQ13123 557 aaPredicted RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 PAK2Q13177 524 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ACVR2BQ13705 512 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 TKFCQ3LXA3 575 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 VPS53Q5VIR6 699 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 FAM109BQ6ICB4 259 aaPredicted RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 RCSD1Q6JBY9 416 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 TAB3Q8N5C8 712 aaPredicted RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 NUP133Q8WUM0 1156 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 FERMT2Q96AC1 680 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ABHD16BQ9H3Z7 469 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ACAD9Q9H845 621 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 GCM1Q9NP62 436 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 CRTAC1Q9NQ79 661 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 PDLIM7Q9NR12 457 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 IL17RBQ9NRM6 502 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ZHX1Q9UKY1 873 aaPredicted RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 LAMA2P24043 3122 aaKnown RBP8.53□□□□□ -1.04
USP54-208ENST00000461520 CDH23Q9H251 3354 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ZNF536O15090 1300 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 ZMYM6O95789 1325 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 SYNRGQ9UMZ2 1314 aa8.53□□□□□ -1.04
USP54-208ENST00000461520 SPTBN5Q9NRC6 3674 aaKnown RBP8.52□□□□□ -1.04
USP54-208ENST00000461520 ZNFX1Q9P2E3 1918 aaKnown RBP8.52□□□□□ -1.04
USP54-208ENST00000461520 MYH4Q9Y623 1939 aa8.52□□□□□ -1.04
USP54-208ENST00000461520 PLXNA1Q9UIW2 1896 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 NUAK1O60285 661 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 RANBP6O60518 1105 aaKnown RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 FGAP02671 866 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 HSPD1P10809 573 aaKnown RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 GUCY2CP25092 1073 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 CST5P28325 142 aaPredicted RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 TLE2Q04725 743 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 HSF5Q4G112 596 aaPredicted RBP8.52□□□□□ -1.05
USP54-208ENST00000461520 KCTD1Q719H9 257 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 ARMCX2Q7L311 632 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 SMC5Q8IY18 1101 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 ZNF654Q8IZM8 581 aa8.52□□□□□ -1.05
USP54-208ENST00000461520 RBBP8NLQ8NC74 664 aaPredicted RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms