RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SNX14Q9Y5W7 946 aa16.04■□□□□ 0.16
HMGN1-208ENST00000443046 MAP1BP46821 2468 aaKnown RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 FAM170BA6NMN3 283 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 ZBTB39O15060 712 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 LAMTOR5O43504 91 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 POU2F2P09086 479 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 ARF4P18085 180 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 RPS6KB1P23443 525 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 MBTD1Q05BQ5 628 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 MXD4Q14582 209 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 EPHA7Q15375 998 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 GALNT17Q6IS24 598 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 BLOC1S2Q6QNY1 142 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 PRSS55Q6UWB4 352 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 MTSS1LQ765P7 747 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 LNX1Q8TBB1 728 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 HAS1Q92839 578 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 LXNQ9BS40 222 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 NFKBIZQ9BYH8 718 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 LTB4R2Q9NPC1 389 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 BMP2KQ9NSY1 1161 aaPredicted RBP16.03■□□□□ 0.16
HMGN1-208ENST00000443046 ZSCAN32Q9NX65 697 aa16.03■□□□□ 0.16
HMGN1-208ENST00000443046 SHISA7A6NL88 538 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 AKAP5P24588 427 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 HSPA4P34932 840 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 CCT2P78371 535 aaKnown RBP16.02■□□□□ 0.16
HMGN1-208ENST00000443046 CSTF1Q05048 431 aaKnown RBP16.02■□□□□ 0.16
HMGN1-208ENST00000443046 SPIRE1Q08AE8 756 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 GRIK3Q13003 919 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 FZD5Q13467 585 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 INF2Q27J81 1249 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 PPP4R3AQ6IN85 833 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 OTUD6AQ7L8S5 288 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 PIK3R5Q8WYR1 880 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 RABGGTAQ92696 567 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 MTRQ99707 1265 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 PAAF1Q9BRP4 392 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 APOL6Q9BWW8 343 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 NCDNQ9UBB6 729 aa16.02■□□□□ 0.16
HMGN1-208ENST00000443046 USP24Q9UPU5 2620 aa16.02■□□□□ 0.15
HMGN1-208ENST00000443046 VWA8A3KMH1 1905 aa16.02■□□□□ 0.15
HMGN1-208ENST00000443046 SF3B1O75533 1304 aaKnown RBP eCLIP16.01■□□□□ 0.154e-6■□□□□ 8.6
HMGN1-208ENST00000443046 F5P12259 2224 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 A0A1B0GUA9 196 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 PRR5-ARHGAP8B1AHC4 643 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 INO80B-WBP1J3KQ70 363 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 TBX3O15119 743 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 TADA2AO75478 443 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 DEXIO95424 95 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 RPS9P46781 194 aaKnown RBP16.01■□□□□ 0.15
HMGN1-208ENST00000443046 ARHGAP8P85298 464 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 PFKPQ01813 784 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 NCBP1Q09161 790 aaKnown RBP16.01■□□□□ 0.15
HMGN1-208ENST00000443046 CAPSQ13938 189 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 HSP90AA2PQ14568 343 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-208ENST00000443046 UBXN2BQ14CS0 331 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 XKR9Q5GH70 373 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 SLC27A1Q6PCB7 646 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 KRT25Q7Z3Z0 450 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 TRIM22Q8IYM9 498 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 HACE1Q8IYU2 909 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 ITFG1Q8TB96 612 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 ATRIPQ8WXE1 791 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 TTPALQ9BTX7 342 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 SLKQ9H2G2 1235 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-208ENST00000443046 ZSWIM4Q9H7M6 989 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 PRMT8Q9NR22 394 aaPredicted RBP16.01■□□□□ 0.15
HMGN1-208ENST00000443046 RGL1Q9NZL6 768 aa16.01■□□□□ 0.15
HMGN1-208ENST00000443046 B4GALT5O43286 388 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 C8AP07357 584 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 CD72P21854 359 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 ARL2P36404 184 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 SSRP1Q08945 709 aaKnown RBP16■□□□□ 0.15
HMGN1-208ENST00000443046 TUSC3Q13454 348 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 TFDP1Q14186 410 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 PPM1LQ5SGD2 360 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 ZBTB41Q5SVQ8 909 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 LIN9Q5TKA1 542 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 ZNF687Q8N1G0 1237 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 ASAP3Q8TDY4 903 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 DYDC2Q96IM9 177 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 AIFM3Q96NN9 605 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 NELL2Q99435 816 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 TRIM6Q9C030 488 aaPredicted RBP16■□□□□ 0.15
HMGN1-208ENST00000443046 CACNG4Q9UBN1 327 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 KCNH3Q9ULD8 1083 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 SMG5Q9UPR3 1016 aaKnown RBP16■□□□□ 0.15
HMGN1-208ENST00000443046 LAMA1P25391 3075 aa16■□□□□ 0.15
HMGN1-208ENST00000443046 CCL16O15467 120 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 ADAM12O43184 909 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 CDC45O75419 566 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 SLITRK3O94933 977 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 LYPLA2O95372 231 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 TDGF1P13385 188 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 GCFC2P16383 781 aaKnown RBP15.99■□□□□ 0.15
HMGN1-208ENST00000443046 TARSP26639 723 aaKnown RBP15.99■□□□□ 0.15
HMGN1-208ENST00000443046 LMNB2Q03252 620 aa15.99■□□□□ 0.15
HMGN1-208ENST00000443046 TOB2Q14106 344 aaPredicted RBP15.99■□□□□ 0.15
HMGN1-208ENST00000443046 CTTNQ14247 550 aaKnown RBP15.99■□□□□ 0.15
HMGN1-208ENST00000443046 NAB2Q15742 525 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms