RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	PPM1J	Q5JR12	505 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	EXOSC6	Q5RKV6	272 aa	Known RBP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	BLOC1S2	Q6QNY1	142 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	RUFY3	Q7L099	469 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	CHST3	Q7LGC8	479 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	BSND	Q8WZ55	320 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	TOP1MT	Q969P6	601 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	IPO9	Q96P70	1041 aa	Known RBP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	OSMR	Q99650	979 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	LRRC2	Q9BYS8	371 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	BHLHE41	Q9C0J9	482 aa	Predicted RBP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	VTA1	Q9NP79	307 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	LATS2	Q9NRM7	1088 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	PDRG1	Q9NUG6	133 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	MBNL3	Q9NUK0	354 aa	Known RBP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	FAM105A	Q9NUU6	356 aa		5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	ARPP21	Q9UBL0	812 aa	Predicted RBP	5.51	□□□□□ -1.53
PTPN4-206	ENST00000441089	TEX15	Q9BXT5	2789 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	MIA3	Q5JRA6	1907 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	MYH4	Q9Y623	1939 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	CFAP46	Q8IYW2	2715 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089		H3BRB1	525 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	PRC1	O43663	620 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	KIN	O60870	393 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	ZBED4	O75132	1171 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	POLR3D	P05423	398 aa	Predicted RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	CKB	P12277	381 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	PSMA5	P28066	241 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	NRIP1	P48552	1158 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SHC2	P98077	582 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	NAALADL2	Q58DX5	795 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	CWF19L1	Q69YN2	538 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	TAPT1	Q6NXT6	567 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089		Q6ZUG5	572 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SESTD1	Q86VW0	696 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	GLYCTK	Q8IVS8	523 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	FAM133A	Q8N9E0	248 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	PRPF38A	Q8NAV1	312 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	NCOA7	Q8NI08	942 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	DDX1	Q92499	740 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	FAM168A	Q92567	244 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	P2RX5	Q93086	422 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SLF1	Q9BQI6	1058 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	AGXT2	Q9BYV1	514 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	IFIH1	Q9BYX4	1025 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	TUT1	Q9H6E5	874 aa	Known RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	ACSS3	Q9H6R3	686 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	TPCN1	Q9ULQ1	816 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	BARX2	Q9UMQ3	279 aa	Predicted RBP	5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SLC5A6	Q9Y289	635 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	RIPK3	Q9Y572	518 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	CYP46A1	Q9Y6A2	500 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	LAMA4	Q16363	1823 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	KIAA1671	Q9BY89	1806 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	LAMA1	P25391	3075 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SDK1	Q7Z5N4	2213 aa		5.5	□□□□□ -1.53
PTPN4-206	ENST00000441089	SH2B2	O14492	632 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	NKRF	O15226	690 aa	Known RBP eCLIP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	ORC4	O43929	436 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	NMT2	O60551	498 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	DTNB	O60941	627 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	GLP2R	O95838	553 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CD8B	P10966	210 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	SERPINB4	P48594	390 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CDK8	P49336	464 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	ARL4D	P49703	201 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	OAZ1	P54368	228 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	ZNF200	P98182	395 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CNTN2	Q02246	1040 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CUL4A	Q13619	759 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	SEC23A	Q15436	765 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	TCTN1	Q2MV58	587 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	RRP12	Q5JTH9	1297 aa	Known RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	FAM83B	Q5T0W9	1011 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	PEAR1	Q5VY43	1037 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	LRSAM1	Q6UWE0	723 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	MFSD6	Q6ZSS7	791 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	C16orf86	Q6ZW13	317 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	C1QL4	Q86Z23	238 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	HSCB	Q8IWL3	235 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	FBXO16	Q8IX29	292 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CPXCR1	Q8N123	301 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	PLD6	Q8N2A8	252 aa	Known RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	FBXL16	Q8N461	479 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	SUMF1	Q8NBK3	374 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	LRRN4CL	Q8ND94	238 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	DBF4B	Q8NFT6	615 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	OR6J1	Q8NGC5	347 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	IGDCC4	Q8TDY8	1250 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	BRF1	Q92994	677 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	TMX3	Q96JJ7	454 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CCDC17	Q96LX7	622 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	CDCA3	Q99618	268 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	WDR11	Q9BZH6	1224 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	SOX17	Q9H6I2	414 aa	Predicted RBP	5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	TLE6	Q9H808	572 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	ACAD9	Q9H845	621 aa		5.49	□□□□□ -1.53
PTPN4-206	ENST00000441089	PDGFC	Q9NRA1	345 aa		5.49	□□□□□ -1.53

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