RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 DLX2Q07687 328 aaPredicted RBP16.67■□□□□ 0.26
LIMS3-201ENST00000437679 GIT2Q14161 759 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 FOXD4L6Q3SYB3 417 aaPredicted RBP16.67■□□□□ 0.26
LIMS3-201ENST00000437679 ATL3Q6DD88 541 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 MPZL3Q6UWV2 235 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 FOXD4L3Q6VB84 417 aaPredicted RBP16.67■□□□□ 0.26
LIMS3-201ENST00000437679 SV2BQ7L1I2 683 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 ZBTB33Q86T24 672 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 CCDC94Q9BW85 323 aaPredicted RBP16.67■□□□□ 0.26
LIMS3-201ENST00000437679 CDT1Q9H211 546 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 PTPRHQ9HD43 1115 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 CD207Q9UJ71 328 aa16.67■□□□□ 0.26
LIMS3-201ENST00000437679 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.66■□□□□ 0.26
LIMS3-201ENST00000437679 C2orf71A6NGG8 1288 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 THP07101 528 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 MCF2P10911 925 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 STAT6P42226 847 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 ZNF131P52739 623 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 YARSP54577 528 aaKnown RBP16.66■□□□□ 0.26
LIMS3-201ENST00000437679 NCKAP1LP55160 1127 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 PKP1Q13835 747 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 CLUL1Q15846 466 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 HAUS6Q7Z4H7 955 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 BICD1Q96G01 975 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 NECAB3Q96P71 396 aaPredicted RBP16.66■□□□□ 0.26
LIMS3-201ENST00000437679 MARCH5Q9NX47 278 aa16.66■□□□□ 0.26
LIMS3-201ENST00000437679 K7ENM7 598 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 TRAK2O60296 914 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 CUTAO60888 179 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 TOM1L1O75674 476 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 GLP2RO95838 553 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 IL9P15248 144 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 PROZP22891 400 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 ABCD1P33897 745 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 GRM5P41594 1212 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 TUSC3Q13454 348 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 ZPBP2Q6X784 338 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 DYMQ7RTS9 669 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 FAM178BQ8IXR5 827 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 KCNG4Q8TDN1 519 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 AUTS2Q8WXX7 1259 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 KCNN1Q92952 543 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 VN1R3Q9BXE9 311 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 PANK2Q9BZ23 570 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 TOPORSQ9NS56 1045 aaPredicted RBP16.65■□□□□ 0.26
LIMS3-201ENST00000437679 CLEC1BQ9P126 229 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 ANKFY1Q9P2R3 1169 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 CFAP45Q9UL16 551 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 IRAK3Q9Y616 596 aa16.65■□□□□ 0.26
LIMS3-201ENST00000437679 TNFRSF10AO00220 468 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 PTGESO14684 152 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 BRD1O95696 1058 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 SOD2P04179 222 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 HARSP12081 509 aaKnown RBP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 MATR3P43243 847 aaKnown RBP eCLIP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 OSTNP61366 133 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 SMAD4Q13485 552 aaKnown RBP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 BECN1Q14457 450 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 LLGL2Q6P1M3 1020 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 PDILTQ8N807 584 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 CEP120Q8N960 986 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 VN1R2Q8NFZ6 395 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 ZBTB45Q96K62 511 aaPredicted RBP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 MSLNLQ96KJ4 702 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 ACAP3Q96P50 834 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 HERC2P3Q9BVR0 1158 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 EMILIN2Q9BXX0 1053 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 MRPL17Q9NRX2 175 aaKnown RBP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 BARX2Q9UMQ3 279 aaPredicted RBP16.64■□□□□ 0.25
LIMS3-201ENST00000437679 SSX2IPQ9Y2D8 614 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 TRIP11Q15643 1979 aa16.64■□□□□ 0.25
LIMS3-201ENST00000437679 CASTOR2A6NHX0 329 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 CLDN3O15551 220 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 MBTPS2O43462 519 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 CLASP2O75122 1294 aaKnown RBP16.63■□□□□ 0.25
LIMS3-201ENST00000437679 TADA2AO75478 443 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 URODP06132 367 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 LIG4P49917 911 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 RBM10P98175 930 aaKnown RBP16.63■□□□□ 0.25
LIMS3-201ENST00000437679 COASYQ13057 564 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 HSP90AA2PQ14568 343 aaPredicted RBP16.63■□□□□ 0.25
LIMS3-201ENST00000437679 NOLC1Q14978 699 aaKnown RBP eCLIP16.63■□□□□ 0.25
LIMS3-201ENST00000437679 PTPN14Q15678 1187 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 TMEM184AQ6ZMB5 413 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 DDX12PQ92771 950 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 CASP10Q92851 521 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 TBX20Q9UMR3 447 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 CITO14578 2027 aa16.63■□□□□ 0.25
LIMS3-201ENST00000437679 A0A087X0B3 334 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 MYMKA6NI61 221 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 F8W810 466 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 ABLIM1O14639 778 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 HNRNPDLO14979 420 aaKnown RBP16.62■□□□□ 0.25
LIMS3-201ENST00000437679 GAP43P17677 238 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 NMT1P30419 496 aaKnown RBP16.62■□□□□ 0.25
LIMS3-201ENST00000437679 ME1P48163 572 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 DNM1Q05193 864 aaKnown RBP16.62■□□□□ 0.25
LIMS3-201ENST00000437679 KCNC3Q14003 757 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 GLRA4Q5JXX5 417 aa16.62■□□□□ 0.25
LIMS3-201ENST00000437679 KIAA1841Q6NSI8 718 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms