RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PLEKHA5Q9HAU0 1116 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 ESRRAP11474 423 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 WASHC5Q12768 1159 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 TMED8Q6PL24 325 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 RNF168Q8IYW5 571 aaPredicted RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PPHLN1Q8NEY8 458 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 VPS11Q9H270 941 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 DDX56Q9NY93 547 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 AIPL1Q9NZN9 384 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 FBXL5Q9UKA1 691 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PYCARDQ9ULZ3 195 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 EMSYQ7Z589 1322 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 ZFYVE19Q96K21 471 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CNOT7Q9UIV1 285 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 DIS3Q9Y2L1 958 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CD2BP2O95400 341 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PRCPP42785 496 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 TXNRD1Q16881 649 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 EFHBQ8N7U6 833 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CELF1Q92879 486 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PGBD4Q96DM1 585 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PFASO15067 1338 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 NPHP3-ACAD11A0A0J9YXS1 232 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 CASP1P29466 404 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 NR1H3Q13133 447 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 SLC13A1Q9BZW2 595 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 UBR1Q8IWV7 1749 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 LGALS16A8MUM7 142 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 HSD17B4P51659 736 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 LMNAP02545 664 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 TUBB6Q9BUF5 446 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 KATNAL1Q9BW62 490 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 PARVAQ9NVD7 372 aa12.76□□□□□ -0.37
CCDC88A-207ENST00000436346 C2CD2LO14523 706 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 CYP27B1O15528 508 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 CHRNA3P32297 505 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 ADA2Q9NZK5 511 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 KPNA7A9QM74 516 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 TTC13Q8NBP0 860 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 SNF8Q96H20 258 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 MTIF3Q9H2K0 278 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 CAV1Q03135 178 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 QRICH1Q2TAL8 776 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 LSM7Q9UK45 103 aaKnown RBP12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 PPP3CCP48454 512 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 SLC26A7Q8TE54 656 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 KIFC3Q9BVG8 833 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 KLHL11Q9NVR0 708 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 SREBF2Q12772 1141 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 TTC23LQ6PF05 361 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 TRIM72Q6ZMU5 477 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 TBC1D19Q8N5T2 526 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 ZFP69BQ9UJL9 534 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 RGPD5Q99666 1765 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 DRAP1Q14919 205 aaPredicted RBP12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 SPDYAQ5MJ70 313 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 FAM20AQ96MK3 541 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 EFNA5P52803 228 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 EFTUD2Q15029 972 aaKnown RBP eCLIP12.75□□□□□ -0.378e-7■■■■□ 19.8
CCDC88A-207ENST00000436346 MEI1Q5TIA1 1274 aa12.75□□□□□ -0.37
CCDC88A-207ENST00000436346 TLR2O60603 784 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 MDM2Q00987 491 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ZBED8Q8IZ13 594 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 STKLD1Q8NE28 680 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 AGR3Q8TD06 166 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 MXD3Q9BW11 206 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 KCNN4O15554 427 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 OXER1Q8TDS5 423 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 TRIM55Q9BYV6 548 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SPAG7O75391 227 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 RPSAP08865 295 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ST8SIA6P61647 398 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SCARF1Q14162 830 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ANGEL2Q5VTE6 544 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 BTBD6Q96KE9 485 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SYTL2Q9HCH5 934 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ENTPD7Q9NQZ7 604 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 REREQ9P2R6 1566 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 TNIP3Q96KP6 325 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 CDHR2Q9BYE9 1310 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 PFDN1O60925 122 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 RESTQ13127 1097 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 KLHL38Q2WGJ6 581 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 LMBRD2Q68DH5 695 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SP8Q8IXZ3 490 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ZNF280CQ8ND82 737 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ENOX1Q8TC92 643 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SPON1Q9HCB6 807 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ZNRF3Q9ULT6 936 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 GTPBP10A4D1E9 387 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 NPM3O75607 178 aaKnown RBP12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 GFAPP14136 432 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 C1orf146Q5VVC0 180 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 GJB4Q9NTQ9 266 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 SNAP23O00161 211 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 NT5C2P49902 561 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 E9PMD0 336 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 ATP1A3P13637 1013 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 CPT1AP50416 773 aa12.74□□□□□ -0.37
CCDC88A-207ENST00000436346 BCAR1P56945 870 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms