RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 RNF169Q8NCN4 708 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 DBF4BQ8NFT6 615 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 RSPH1Q8WYR4 309 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 SAAL1Q96ER3 474 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 ZBTB45Q96K62 511 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 TSPAN18Q96SJ8 248 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 APOL6Q9BWW8 343 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 WNT8AQ9H1J5 351 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 CDT1Q9H211 546 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 IL23AQ9NPF7 189 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 RGS18Q9NS28 235 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 FANCLQ9NW38 375 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 PCDHB2Q9Y5E7 798 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 ALPK3Q96L96 1907 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 GOLGA8IPA6NC78 632 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 TRIM43BA6NCK2 446 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 GOLGA8JA6NMD2 632 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 NBNO60934 754 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 N4BP1O75113 896 aaKnown RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 BAIAP3O94812 1187 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 TNNI1P19237 187 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 PROZP22891 400 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 HOXA11P31270 313 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 GRM5P41594 1212 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 ACOT2P49753 483 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 AP3M2P53677 418 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 OSTNP61366 133 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 DCAF17Q5H9S7 520 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 FKBP15Q5T1M5 1219 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 CDR2LQ86X02 465 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 CCDC150Q8NCX0 1101 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 URGCPQ8TCY9 931 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 TRIM43Q96BQ3 446 aaPredicted RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 CNOT6LQ96LI5 555 aaKnown RBP10.98□□□□□ -0.65
CD44-207ENST00000425428 TRAIPQ9BWF2 469 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 PLEKHA5Q9HAU0 1116 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 PTPRHQ9HD43 1115 aa10.98□□□□□ -0.65
CD44-207ENST00000425428 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.98□□□□□ -0.65
CD44-207ENST00000425428 UMODL1Q5DID0 1318 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 A0A0U1RQF3 1178 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 ZBBXA8MT70 800 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 FGBP02675 491 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 CSF2RAP15509 400 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 ADSSP30520 456 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 VAMP7P51809 220 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 PMS1P54277 932 aaKnown RBP10.97□□□□□ -0.65
CD44-207ENST00000425428 ENPEPQ07075 957 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 IQCB1Q15051 598 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 TCP11X2Q5H9J9 407 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 EEF1DP3Q658K8 133 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 NT5DC4Q86YG4 428 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 DHX40Q8IX18 779 aaKnown RBP10.97□□□□□ -0.65
CD44-207ENST00000425428 ANKRD36BP1Q96IX9 119 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 DUSP9Q99956 384 aaKnown RBP10.97□□□□□ -0.65
CD44-207ENST00000425428 TSPYL2Q9H2G4 693 aaPredicted RBP10.97□□□□□ -0.65
CD44-207ENST00000425428 ASB7Q9H672 318 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 DMAC2Q9NW81 257 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 USP20Q9Y2K6 914 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 GIT1Q9Y2X7 761 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 IPPQ9Y573 584 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 DNAH12Q6ZR08 3092 aa10.97□□□□□ -0.65
CD44-207ENST00000425428 ZNF623O75123 536 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 PHACTR2O75167 634 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 TNNC2P02585 160 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 TMEM191BP0C7N4 346 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 DLATP10515 647 aaKnown RBP10.96□□□□□ -0.65
CD44-207ENST00000425428 BFSP1Q12934 665 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 GSE1Q14687 1217 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 HSP90AA4PQ58FG1 418 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 SLC39A4Q6P5W5 647 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 TRAF7Q6Q0C0 670 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 GLB1LQ6UWU2 654 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 TMC2Q8TDI7 906 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 BADQ92934 168 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 CCDC127Q96BQ5 260 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 FAM193BQ96PV7 902 aaPredicted RBP10.96□□□□□ -0.65
CD44-207ENST00000425428 TUBGCP2Q9BSJ2 902 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 EIF2AQ9BY44 585 aaKnown RBP10.96□□□□□ -0.65
CD44-207ENST00000425428 ELAC1Q9H777 363 aaKnown RBP10.96□□□□□ -0.65
CD44-207ENST00000425428 SLC38A7Q9NVC3 462 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 SNTG2Q9NY99 539 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 KANSL3Q9P2N6 904 aa10.96□□□□□ -0.65
CD44-207ENST00000425428 MICAL3Q7RTP6 2002 aa10.96□□□□□ -0.66
CD44-207ENST00000425428 TISP43B9A030 160 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 ENPP3O14638 875 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 AKAP3O75969 853 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 SYN1P17600 705 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 CYP24A1Q07973 514 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 MBTPS1Q14703 1052 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 MAN2A1Q16706 1144 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 DUOXA2Q1HG44 320 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 LRRC55Q6ZSA7 311 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 BRSK2Q8IWQ3 736 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 ZC3H3Q8IXZ2 948 aaKnown RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 EEF2KMTQ96G04 330 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 FBXL18Q96ME1 805 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 PCMTD1Q96MG8 357 aaPredicted RBP10.95□□□□□ -0.66
CD44-207ENST00000425428 IMPG2Q9BZV3 1241 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 RSAD1Q9HA92 442 aa10.95□□□□□ -0.66
CD44-207ENST00000425428 SAMSN1Q9NSI8 373 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms