RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 SIK3Q9Y2K2 1263 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 SH3BP1Q9Y3L3 701 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 IPPQ9Y573 584 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 PCDHA13Q9Y5I0 950 aa3.43□□□□□ -1.86
VPS41-206ENST00000418457 ZMYM3Q14202 1370 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 HOXA3O43365 443 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 TSPAN6O43657 245 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 SGTAO43765 313 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 FOXD2O60548 495 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 MFAP3LO75121 409 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 GPR32O75388 356 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 IPO13O94829 963 aaKnown RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 POU2F2P09086 479 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 U2AF1L5P0DN76 240 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 IL2RBP14784 551 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 SYN1P17600 705 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 GNAT2P19087 354 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 PDCP20941 246 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 SLC6A9P48067 706 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 FLT3LGP49771 235 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 U2AF1Q01081 240 aaKnown RBP eCLIP3.42□□□□□ -1.86
VPS41-206ENST00000418457 SP140Q13342 867 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 IL10RAQ13651 578 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 LRRC41Q15345 812 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 ELAVL1Q15717 326 aaKnown RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 FAM47AQ5JRC9 791 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 CXorf57Q6NSI4 855 aaKnown RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 LILRA6Q6PI73 481 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 ZNF572Q7Z3I7 529 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 APBB1IPQ7Z5R6 666 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 RSPH3Q86UC2 560 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 SGMS1Q86VZ5 419 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 ANKRD35Q8N283 1001 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 TTC9BQ8N6N2 239 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 FBXO18Q8NFZ0 1043 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 FAM89AQ96GI7 184 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 BORCS6Q96GS4 357 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 ANP32EQ9BTT0 268 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 DEF6Q9H4E7 631 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 LDAHQ9H6V9 325 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 TDP1Q9NUW8 608 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 MOCS1Q9NZB8 636 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 AJAP1Q9UKB5 411 aaPredicted RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 HDAC5Q9UQL6 1122 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 TCAF1Q9Y4C2 921 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 CFAP20Q9Y6A4 193 aaKnown RBP3.42□□□□□ -1.86
VPS41-206ENST00000418457 SYNJ1O43426 1573 aa3.42□□□□□ -1.86
VPS41-206ENST00000418457 TOP2BQ02880 1626 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 BIVM-ERCC5R4GMW8 1640 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CAPN14A8MX76 684 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 TEX33O43247 280 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 OFD1O75665 1012 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 RAP2AP10114 183 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 ALOX15P16050 662 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 ACO1P21399 889 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 GUCY1A2P33402 732 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 SELENOPP49908 381 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CDC42EP1Q00587 391 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 PTH1RQ03431 593 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 MFSD14BQ5SR56 506 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 IFIT1BQ5T764 474 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 FAM102BQ5T8I3 360 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 USP45Q70EL2 814 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 DOK3Q7L591 496 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CATIPQ7Z7H3 387 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 TTC7BQ86TV6 843 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 FAM83AQ86UY5 434 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 TPH2Q8IWU9 490 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 DRC7Q8IY82 874 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 ELOA2Q8IYF1 753 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 ZNF808Q8N4W9 903 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 MB21D1Q8N884 522 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CASKIN2Q8WXE0 1202 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 STON2Q8WXE9 905 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 ST8SIA2Q92186 375 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 KAT5Q92993 513 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 RAB24Q969Q5 203 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 MIEF2Q96C03 454 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CEP95Q96GE4 821 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 TMX3Q96JJ7 454 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 LRGUKQ96M69 825 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 AIFM3Q96NN9 605 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 CPPED1Q9BRF8 314 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 GTPBP4Q9BZE4 634 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 CD248Q9HCU0 757 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 NMRK2Q9NPI5 230 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 SMPD4Q9NXE4 827 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 HECAQ9UBI9 543 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 ST6GALNAC2Q9UJ37 374 aa3.41□□□□□ -1.86
VPS41-206ENST00000418457 NOB1Q9ULX3 412 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 RRBP1Q9P2E9 1410 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 MYBBP1AQ9BQG0 1328 aaKnown RBP3.41□□□□□ -1.86
VPS41-206ENST00000418457 ATRNL1Q5VV63 1379 aa3.4□□□□□ -1.86
VPS41-206ENST00000418457 DHX57Q6P158 1386 aaKnown RBP3.4□□□□□ -1.86
VPS41-206ENST00000418457 PRR5-ARHGAP8B1AHC4 643 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 B5MCH6 92 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 CYP27B1O15528 508 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 PJA2O43164 708 aa3.4□□□□□ -1.87
VPS41-206ENST00000418457 AP1G1O43747 822 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms