RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 IPPQ9Y573 584 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 PCDHB2Q9Y5E7 798 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 CITO14578 2027 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 RALGAPA2Q2PPJ7 1873 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 ZNF233A6NK53 670 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TTLL13PA6NNM8 815 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 PES1O00541 588 aaKnown RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TGFB1I1O43294 461 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 EXTL3O43909 919 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 MGEA5O60502 916 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 EDN1P05305 212 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 CLTAP09496 248 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 CDK11BP21127 795 aaKnown RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 BMP6P22004 513 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 HOXA11P31270 313 aaPredicted RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 PSMC2P35998 433 aaKnown RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 GRM5P41594 1212 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 ACOT2P49753 483 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 ZNF165P49910 485 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 MYL5Q02045 173 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 SEZ6Q53EL9 994 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TCERG1LQ5VWI1 586 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 ANKRD40Q6AI12 368 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 CENPPQ6IPU0 288 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 FAM117BQ6P1L5 589 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 GLB1LQ6UWU2 654 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 MAMSTRQ6ZN01 415 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 ECHDC2Q86YB7 292 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 NPAS4Q8IUM7 802 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 FAM186BQ8IYM0 893 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 FAM193BQ96PV7 902 aaPredicted RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TSPYL2Q9H2G4 693 aaPredicted RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 IKZF4Q9H2S9 585 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TMX1Q9H3N1 280 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 SEMA6BQ9H3T3 888 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 RSAD1Q9HA92 442 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 UBN1Q9NPG3 1134 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 SNTG2Q9NY99 539 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 RBAKQ9NYW8 714 aaPredicted RBP9.22□□□□□ -0.93
TRIM48-201ENST00000417545 INPP5FQ9Y2H2 1132 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 SLC4A7Q9Y6M7 1214 aa9.22□□□□□ -0.93
TRIM48-201ENST00000417545 TDRD15B5MCY1 1934 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 A0A0B4J269 797 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 A0A0U1RQF3 1178 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 H0YGN5 161 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 ENPP3O14638 875 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 XPOTO43592 962 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 RECQL4O94761 1208 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 IL18RAPO95256 599 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 GNA14O95837 355 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 EOMESO95936 686 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 AKAP5P24588 427 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 HOXD13P35453 343 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 MTIF2P46199 727 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 WDR5P61964 334 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 RNASELQ05823 741 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 MYBPC2Q14324 1141 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 DSC3Q14574 896 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SURF1Q15526 300 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SNRNP35Q16560 246 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 DCAF17Q5H9S7 520 aaPredicted RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SPOUT1Q5T280 376 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SLC39A4Q6P5W5 647 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 C12orf56Q8IXR9 622 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 TET1Q8NFU7 2136 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 LPPQ93052 612 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 CEP63Q96MT8 703 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SLC9A7Q96T83 725 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 YME1L1Q96TA2 773 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 SRRTQ9BXP5 876 aaKnown RBP9.21□□□□□ -0.94
TRIM48-201ENST00000417545 TMEM161AQ9NX61 479 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 HES2Q9Y543 173 aa9.21□□□□□ -0.94
TRIM48-201ENST00000417545 C9IYK1 514 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 SLC16A3O15427 465 aaKnown RBP9.2□□□□□ -0.94
TRIM48-201ENST00000417545 STX10O60499 249 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 TMEM191BP0C7N4 346 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 CXCL8P10145 99 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 DLATP10515 647 aaKnown RBP9.2□□□□□ -0.94
TRIM48-201ENST00000417545 PROZP22891 400 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 TNFSF9P41273 254 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 RGS19P49795 217 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 ZNF445P59923 1031 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 GPNMBQ14956 572 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 NFIL3Q16649 462 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 ZCWPW2Q504Y3 356 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 HSP90AA4PQ58FG1 418 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 TMEM240Q5SV17 173 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 UBXN11Q5T124 520 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 SPATA1Q5VX52 437 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 TTI2Q6NXR4 508 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.2□□□□□ -0.94
TRIM48-201ENST00000417545 SLC9A9Q8IVB4 645 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 CD302Q8IX05 232 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 CEP120Q8N960 986 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 HELQQ8TDG4 1101 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 LINC01599Q8WXQ3 324 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 HERVK_113Q902F9 699 aa9.2□□□□□ -0.94
TRIM48-201ENST00000417545 EEF2KMTQ96G04 330 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms