RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 RIF1Q5UIP0 2472 aaKnown RBP16.4■□□□□ 0.22
RPS28-201ENST00000417088 PI15O43692 258 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 NARSO43776 548 aaKnown RBP16.39■□□□□ 0.21
RPS28-201ENST00000417088 TADA2AO75478 443 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 TUSC3Q13454 348 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 HSP90AA2PQ14568 343 aaPredicted RBP16.39■□□□□ 0.21
RPS28-201ENST00000417088 ZBTB8OSQ8IWT0 167 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 PDZD7Q9H5P4 517 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 ZDHHC7Q9NXF8 308 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 EPS15L1Q9UBC2 864 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 FBXL21Q9UKT6 434 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 USP20Q9Y2K6 914 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 MYO15AQ9UKN7 3530 aa16.39■□□□□ 0.21
RPS28-201ENST00000417088 PTGESO14684 152 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 CYP11B2P19099 503 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 AOC1P19801 751 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 RPA1P27694 616 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 NBL1P41271 181 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 SAFBQ15424 915 aaKnown RBP eCLIP16.38■□□□□ 0.21
RPS28-201ENST00000417088 ZNF174Q15697 407 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 RTP2Q5QGT7 225 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 POTEGQ6S5H5 508 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 PADI6Q6TGC4 694 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 PRSS55Q6UWB4 352 aaPredicted RBP16.38■□□□□ 0.21
RPS28-201ENST00000417088 SIX5Q8N196 739 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 SLC44A3Q8N4M1 653 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 PRKD2Q9BZL6 878 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 C2orf40Q9H1Z8 148 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 CXCL16Q9H2A7 254 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 PIDD1Q9HB75 910 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 PPP4R2Q9NY27 417 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 SNTG2Q9NY99 539 aa16.38■□□□□ 0.21
RPS28-201ENST00000417088 SF3B1O75533 1304 aaKnown RBP eCLIP16.38■□□□□ 0.21
RPS28-201ENST00000417088 ARHGEF35A5YM69 484 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 CASTOR2A6NHX0 329 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 ACKR2O00590 384 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 N4BP3O15049 544 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 EDN1P05305 212 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 OR52Z1P0C646 297 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 NAMPTP43490 491 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 CREMQ03060 361 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 PRPF4BQ13523 1007 aaKnown RBP16.37■□□□□ 0.21
RPS28-201ENST00000417088 NAB2Q15742 525 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 MAPK6Q16659 721 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 ASCL5Q7RTU5 278 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 HASPINQ8TF76 798 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 CCDC113Q9H0I3 377 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 CFAP54Q96N23 3096 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 DOCK8Q8NF50 2099 aa16.37■□□□□ 0.21
RPS28-201ENST00000417088 MTCL1Q9Y4B5 1905 aaKnown RBP16.37■□□□□ 0.21
RPS28-201ENST00000417088 ZMYND10O75800 440 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 RECQL4O94761 1208 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 KIF4AO95239 1232 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 SEC24BO95487 1268 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 PRKCBP05771 671 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 THP07101 528 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 CFHP08603 1231 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 LIG1P18858 919 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 ORC2Q13416 577 aaPredicted RBP16.36■□□□□ 0.21
RPS28-201ENST00000417088 TMEM132AQ24JP5 1023 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 EEF1DP3Q658K8 133 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 NOSTRINQ8IVI9 506 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 CCDC83Q8IWF9 413 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 ERMNQ8TAM6 284 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 DEPTORQ8TB45 409 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 PIK3R5Q8WYR1 880 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 NXPE3Q969Y0 559 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 C8orf76Q96K31 380 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 CLSTN3Q9BQT9 956 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 TTPALQ9BTX7 342 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 FOXP1Q9H334 677 aaPredicted RBP16.36■□□□□ 0.21
RPS28-201ENST00000417088 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.36■□□□□ 0.217e-6■■■■□ 20.5
RPS28-201ENST00000417088 WNT16Q9UBV4 365 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 LIMCH1Q9UPQ0 1083 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 FAM186AA6NE01 2351 aa16.36■□□□□ 0.21
RPS28-201ENST00000417088 DMDP11532 3685 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 KRBA1A5PL33 1030 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 LAMP2P13473 410 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 ECM1Q16610 540 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 FAM171A1Q5VUB5 890 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 CEP57Q86XR8 500 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 CCDC105Q8IYK2 499 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 LNX1Q8TBB1 728 aaPredicted RBP16.35■□□□□ 0.21
RPS28-201ENST00000417088 RTP3Q9BQQ7 232 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 ADPGKQ9BRR6 497 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 POLD4Q9HCU8 107 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 FBXW11Q9UKB1 542 aa16.35■□□□□ 0.21
RPS28-201ENST00000417088 PRR23AA6NEV1 266 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 ANHXE9PGG2 379 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
RPS28-201ENST00000417088 SRFP11831 508 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 MUTP22033 750 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 PPP2R5AQ15172 486 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 TTC38Q5R3I4 469 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 GET4Q7L5D6 327 aaPredicted RBP16.34■□□□□ 0.21
RPS28-201ENST00000417088 FRMD5Q7Z6J6 570 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 C4orf32Q8N8J7 132 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 DTWD2Q8NBA8 298 aa16.34■□□□□ 0.21
RPS28-201ENST00000417088 LLPHQ9BRT6 129 aaKnown RBP16.34■□□□□ 0.21
RPS28-201ENST00000417088 KIFC3Q9BVG8 833 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms