RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 GPD1LQ8N335 351 aa16.88■□□□□ 0.29
SHMT2-202ENST00000414700 SLC35C1Q96A29 364 aa16.88■□□□□ 0.29
SHMT2-202ENST00000414700 TNFSF13BQ9Y275 285 aa16.88■□□□□ 0.29
SHMT2-202ENST00000414700 TRPV2Q9Y5S1 764 aa16.88■□□□□ 0.29
SHMT2-202ENST00000414700 LGALS16A8MUM7 142 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 M0QZ92 97 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 PQBP1O60828 265 aaKnown RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 SLU7O95391 586 aaKnown RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 TRIM49P0CI25 452 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 TRIM49CP0CI26 452 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 COL6A1P12109 1028 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 MCL1Q07820 350 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 BMS1Q14692 1282 aaKnown RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 VWA3BQ502W6 1294 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 TCERG1LQ5VWI1 586 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 SLFN12LQ6IEE8 588 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 MPZL3Q6UWV2 235 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 FAM228AQ86W67 206 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 LRRC8AQ8IWT6 810 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 FAM84AQ96KN4 292 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 CDT1Q9H211 546 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 NDST4Q9H3R1 872 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 TRIP11Q15643 1979 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 A0A1B0GUA9 196 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 KIF2AO00139 706 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 CD4P01730 458 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 CKBP12277 381 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 CAPN2P17655 700 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 OSTNP61366 133 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 UBXN1Q04323 297 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 BFSP1Q12934 665 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 SLC39A5Q6ZMH5 540 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 TMEM192Q8IY95 271 aa16.87■□□□□ 0.29
SHMT2-202ENST00000414700 PAWRQ96IZ0 340 aaKnown RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 AGO3Q9H9G7 860 aaKnown RBP16.87■□□□□ 0.29
SHMT2-202ENST00000414700 EXTL3O43909 919 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 KCNH2Q12809 1159 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 C1orf220Q5T0J3 134 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 TRAF7Q6Q0C0 670 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 THNSL1Q8IYQ7 743 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 POP1Q99575 1024 aaKnown RBP16.86■□□□□ 0.29
SHMT2-202ENST00000414700 METTL14Q9HCE5 456 aaKnown RBP16.86■□□□□ 0.29
SHMT2-202ENST00000414700 KCND1Q9NSA2 647 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 AGPAT5Q9NUQ2 364 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 ANK1P16157 1881 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 CBFA2T2O43439 604 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 GHRP10912 638 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 SFPQP23246 707 aaKnown RBP eCLIP16.86■□□□□ 0.29
SHMT2-202ENST00000414700 PBX1P40424 430 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 FILIP1LQ4L180 1135 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 CCDC127Q96BQ5 260 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 EIF2AQ9BY44 585 aaKnown RBP16.86■□□□□ 0.29
SHMT2-202ENST00000414700 MMRN2Q9H8L6 949 aa16.86■□□□□ 0.29
SHMT2-202ENST00000414700 PIN4Q9Y237 131 aaKnown RBP16.86■□□□□ 0.29
SHMT2-202ENST00000414700 TET1Q8NFU7 2136 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 USP27XA6NNY8 438 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 RPS6KA5O75582 802 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 KLK7P49862 253 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 CYP24A1Q07973 514 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 NFX1Q12986 1120 aaKnown RBP16.85■□□□□ 0.29
SHMT2-202ENST00000414700 MBTPS1Q14703 1052 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 TRIM60Q495X7 471 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 INTS8Q75QN2 995 aaKnown RBP16.85■□□□□ 0.29
SHMT2-202ENST00000414700 ZNF446Q9NWS9 450 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.85■□□□□ 0.29
SHMT2-202ENST00000414700 ST3GAL5Q9UNP4 418 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 V9GYY5 206 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-202ENST00000414700 CITO14578 2027 aa16.85■□□□□ 0.29
SHMT2-202ENST00000414700 UMODL1Q5DID0 1318 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 OGTO15294 1046 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 H2AFXP16104 143 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 VAMP7P51809 220 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 FBXO47Q5MNV8 452 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 TMC6Q7Z403 805 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 VSTM4Q8IW00 320 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 PARD3BQ8TEW8 1205 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 MFSD14AQ96MC6 490 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 TMEM106CQ9BVX2 250 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 ST7Q9NRC1 585 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 TOPORSQ9NS56 1045 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 PCDH10Q9P2E7 1040 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 ZNF233A6NK53 670 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 MAPK13O15264 365 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 MEFVO15553 781 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 RPLP2P05387 115 aaKnown RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CD52P31358 61 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 PPP3CAQ08209 521 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 LPIN1Q14693 890 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CBWD6Q4V339 395 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CBWD3Q5JTY5 395 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CBWD5Q5RIA9 395 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 LMBRD2Q68DH5 695 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 NOTUMQ6P988 496 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CRACR2AQ9BSW2 395 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 PDE11AQ9HCR9 933 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 RBAKQ9NYW8 714 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 CPSF3Q9UKF6 684 aaKnown RBP16.84■□□□□ 0.29
SHMT2-202ENST00000414700 HES2Q9Y543 173 aa16.84■□□□□ 0.29
SHMT2-202ENST00000414700 SCN5AQ14524 2016 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms