RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZDHHC14Q8IZN3 488 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 TMEM161BQ8NDZ6 487 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 FBXL13Q8NEE6 735 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ACTRT1Q8TDG2 376 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PARD3BQ8TEW8 1205 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 C10orf88Q9H8K7 445 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 TBC1D22BQ9NU19 505 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PGK2P07205 417 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 ACTR2P61160 394 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 PPP2R5AQ15172 486 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 TTC27Q6P3X3 843 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 GADL1Q6ZQY3 521 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 GSTA5Q7RTV2 222 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 CPLX4Q7Z7G2 160 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 THNSL1Q8IYQ7 743 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 DEPTORQ8TB45 409 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 TRAPPC12Q8WVT3 735 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 CAVIN3Q969G5 261 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 HES6Q96HZ4 224 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 AZI2Q9H6S1 392 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 JPH1Q9HDC5 661 aaPredicted RBP14.37□□□□□ -0.11
VPS54-203ENST00000409558 C1orf112Q9NSG2 853 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 CAPN7Q9Y6W3 813 aa14.37□□□□□ -0.11
VPS54-203ENST00000409558 DYNLT1P63172 113 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 TMEM132BQ14DG7 1078 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 PCNX4Q63HM2 1172 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 OTUD6BQ8N6M0 293 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 TRPM4Q8TD43 1214 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 EPS8L3Q8TE67 593 aaKnown RBP14.36□□□□□ -0.11
VPS54-203ENST00000409558 MKNK1Q9BUB5 465 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 KCNK9Q9NPC2 374 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 CD2APQ9Y5K6 639 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 UBIAD1Q9Y5Z9 338 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 BRCA2P51587 3418 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 CHRNB2P17787 502 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 ECHS1P30084 290 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 IFI35P80217 286 aaPredicted RBP14.36□□□□□ -0.11
VPS54-203ENST00000409558 MOV10L1Q9BXT6 1211 aaKnown RBP14.36□□□□□ -0.11
VPS54-203ENST00000409558 NXF1Q9UBU9 619 aaKnown RBP14.36□□□□□ -0.11
VPS54-203ENST00000409558 UMODL1Q5DID0 1318 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 IFNB1P01574 187 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 FMO1Q01740 532 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 SP2Q02086 613 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 STRN3Q13033 797 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 TNFAIP1Q13829 316 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 LONRF1Q17RB8 773 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 SGO2Q562F6 1265 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 CYP4F22Q6NT55 531 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 DYDC1Q8WWB3 177 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 A1CFQ9NQ94 594 aaKnown RBP14.36□□□□□ -0.11
VPS54-203ENST00000409558 FBXO40Q9UH90 709 aa14.36□□□□□ -0.11
VPS54-203ENST00000409558 TTLL13PA6NNM8 815 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 SCP2P22307 547 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 CCND2P30279 289 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 RPL21P46778 160 aaKnown RBP14.35□□□□□ -0.11
VPS54-203ENST00000409558 FKBP1AP62942 108 aaKnown RBP14.35□□□□□ -0.11
VPS54-203ENST00000409558 WDR44Q5JSH3 913 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 DDX23Q9BUQ8 820 aaKnown RBP14.35□□□□□ -0.11
VPS54-203ENST00000409558 GRIN2DO15399 1336 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 K7ERI5 159 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 DENND2CQ68D51 928 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 SLC39A4Q6P5W5 647 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 PRELID2Q8N945 189 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 ZNF280CQ8ND82 737 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 CHST7Q9NS84 486 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 SLC9A2Q9UBY0 812 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 GOLGA8SH3BPF8 625 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 THAP12O43422 761 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 KRT10P13645 584 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 CAMKK2Q96RR4 588 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 EXOC7Q9UPT5 735 aa14.35□□□□□ -0.11
VPS54-203ENST00000409558 VIMP08670 466 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 WEE2P0C1S8 567 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 RARAP10276 462 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 BACE1P56817 501 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 ITIH3Q06033 890 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 R3HDM1Q15032 1099 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 ZKSCAN8Q15776 578 aaPredicted RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 TMC3Q7Z5M5 1100 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 ATP8B4Q8TF62 1192 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 NLRP4Q96MN2 994 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 CCT8L2Q96SF2 557 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 PFASO15067 1338 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 GTPBP10A4D1E9 387 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 GOLGA8MH3BSY2 632 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 CD19P15391 556 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 TFAMQ00059 246 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 TEPSINQ96N21 525 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 ERP44Q9BS26 406 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 CTNNAL1Q9UBT7 734 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 COL11A2P13942 1736 aaPredicted RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 CTNND1O60716 968 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 PPP1R37O75864 691 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 MMS22LQ6ZRQ5 1243 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 AGBL3Q8NEM8 1001 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 GDAP1Q8TB36 358 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 NSUN6Q8TEA1 469 aaKnown RBP14.34□□□□□ -0.11
VPS54-203ENST00000409558 MSTO1Q9BUK6 570 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 STXBP5LQ9Y2K9 1186 aa14.34□□□□□ -0.11
VPS54-203ENST00000409558 COL4A5P29400 1685 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms