RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 DHX40Q8IX18 779 aaKnown RBP13.42□□□□□ -0.26
LINC00339-201ENST00000404210 HACE1Q8IYU2 909 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 SMG8Q8ND04 991 aaKnown RBP13.42□□□□□ -0.26
LINC00339-201ENST00000404210 LINC01599Q8WXQ3 324 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 PGBD4Q96DM1 585 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 SAAL1Q96ER3 474 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 ACAP3Q96P50 834 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 CCDC94Q9BW85 323 aaPredicted RBP13.42□□□□□ -0.26
LINC00339-201ENST00000404210 THAP9Q9H5L6 903 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 IPPQ9Y573 584 aa13.42□□□□□ -0.26
LINC00339-201ENST00000404210 GOLGA8IPA6NC78 632 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 GOLGA8JA6NMD2 632 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 SLC16A3O15427 465 aaKnown RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 AKAP3O75969 853 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ADRB2P07550 413 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 HARSP12081 509 aaKnown RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ITGA4P13612 1032 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 CASP4P49662 377 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ACOT2P49753 483 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ENPEPQ07075 957 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 SURF1Q15526 300 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 TMEM240Q5SV17 173 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 CEP135Q66GS9 1140 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 PSRC1Q6PGN9 363 aaPredicted RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ZNF365Q70YC5 407 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 FRMD5Q7Z6J6 570 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ZNF598Q86UK7 904 aaKnown RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ECHDC2Q86YB7 292 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 CD302Q8IX05 232 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 AOPEPQ8N6M6 819 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 CEP120Q8N960 986 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 RDH13Q8NBN7 331 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 ZSWIM2Q8NEG5 633 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 MFSD14AQ96MC6 490 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 FAM213AQ9BRX8 229 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 RPF1Q9H9Y2 349 aaKnown RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 PLEKHA5Q9HAU0 1116 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 METTL14Q9HCE5 456 aaKnown RBP13.41□□□□□ -0.26
LINC00339-201ENST00000404210 UBN1Q9NPG3 1134 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 FANCLQ9NW38 375 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 SNTG2Q9NY99 539 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 NFE2L3Q9Y4A8 694 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 DNAH12Q6ZR08 3092 aa13.41□□□□□ -0.26
LINC00339-201ENST00000404210 MICAL3Q7RTP6 2002 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 RBAK-RBAKDNI3L0D1 243 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 EPB41P11171 864 aaKnown RBP13.4□□□□□ -0.26
LINC00339-201ENST00000404210 TNFSF9P41273 254 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 YARSP54577 528 aaKnown RBP13.4□□□□□ -0.26
LINC00339-201ENST00000404210 MARSP56192 900 aaKnown RBP13.4□□□□□ -0.26
LINC00339-201ENST00000404210 SNRNP35Q16560 246 aaKnown RBP13.4□□□□□ -0.26
LINC00339-201ENST00000404210 SEZ6Q53EL9 994 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 ALKAL1Q6UXT8 129 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 GAS2L3Q86XJ1 694 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 IRF2BP1Q8IU81 584 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 CBWD2Q8IUF1 395 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 FAM114A1Q8IWE2 563 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 FAM186BQ8IYM0 893 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 CRIPAKQ8N1N5 446 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 BORCS6Q96GS4 357 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 TSPAN18Q96SJ8 248 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 SAMSN1Q9NSI8 373 aaKnown RBP13.4□□□□□ -0.26
LINC00339-201ENST00000404210 TMEM161AQ9NX61 479 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 PARP2Q9UGN5 583 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 GIT1Q9Y2X7 761 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 PCDHB7Q9Y5E2 793 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 TTC3P53804 2025 aa13.4□□□□□ -0.26
LINC00339-201ENST00000404210 GOLGA6L19H0YKK7 550 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 ATF7P17544 494 aaPredicted RBP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 EPHB4P54760 987 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 OSTNP61366 133 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TPM4P67936 248 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 CYP24A1Q07973 514 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 SLC10A6Q3KNW5 377 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 XKR4Q5GH76 650 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 ZBTB41Q5SVQ8 909 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 CDKAL1Q5VV42 579 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 AGMOQ6ZNB7 445 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 INTS8Q75QN2 995 aaKnown RBP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 LUZP1Q86V48 1076 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 BRSK2Q8IWQ3 736 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TMEM192Q8IY95 271 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TMC2Q8TDI7 906 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 HERVK_113Q902F9 699 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TOP1MTQ969P6 601 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 EEF2KMTQ96G04 330 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 NXF3Q9H4D5 531 aaKnown RBP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 ASB7Q9H672 318 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TOPORSQ9NS56 1045 aaPredicted RBP13.39□□□□□ -0.27
LINC00339-201ENST00000404210 HES2Q9Y543 173 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 CITO14578 2027 aa13.39□□□□□ -0.27
LINC00339-201ENST00000404210 TTC26A0AVF1 554 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 LRRC10BA6NIK2 292 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 LACTBL1A8MY62 500 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 IL18RAPO95256 599 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 AMHP03971 560 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 KRT13P13646 458 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 ZNF18P17022 549 aa13.38□□□□□ -0.27
LINC00339-201ENST00000404210 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms