RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TNFSF9P41273 254 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 DSC3Q14574 896 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 TCERG1LQ5VWI1 586 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 MFSD5Q6N075 450 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 INTS8Q75QN2 995 aaKnown RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 HACE1Q8IYU2 909 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 FAM212AQ96EL1 285 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 ACAP3Q96P50 834 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 RPF1Q9H9Y2 349 aaKnown RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 GRPEL1Q9HAV7 217 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 FAM105AQ9NUU6 356 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 RBAKQ9NYW8 714 aaPredicted RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 CPSF3Q9UKF6 684 aaKnown RBP19.66■□□□□ 0.74
SDC1-203ENST00000403076 PCDHB2Q9Y5E7 798 aa19.66■□□□□ 0.74
SDC1-203ENST00000403076 FSD2A1L4K1 749 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 MGEA5O60502 916 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 CXCL10P02778 98 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 GRM5P41594 1212 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 RAB27AP51159 221 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 KRT31Q15323 416 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 CRELD2Q6UXH1 353 aaPredicted RBP19.65■□□□□ 0.74
SDC1-203ENST00000403076 TUBGCP2Q9BSJ2 902 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 SNTG2Q9NY99 539 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 TAB2Q9NYJ8 693 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 PARP2Q9UGN5 583 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 HES2Q9Y543 173 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 IPPQ9Y573 584 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 DNAH12Q6ZR08 3092 aa19.65■□□□□ 0.74
SDC1-203ENST00000403076 CSF2RAP15509 400 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 YARSP54577 528 aaKnown RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 MARSP56192 900 aaKnown RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 FANCCQ00597 558 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 CYP24A1Q07973 514 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 DCAF17Q5H9S7 520 aaPredicted RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 USP37Q86T82 979 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 TMEM192Q8IY95 271 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 RPUSD2Q8IZ73 545 aaKnown RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 CCDC127Q96BQ5 260 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 MFSD14AQ96MC6 490 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 VPS16Q9H269 839 aa19.64■□□□□ 0.73
SDC1-203ENST00000403076 NXF3Q9H4D5 531 aaKnown RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 LIMA1Q9UHB6 759 aaKnown RBP19.64■□□□□ 0.73
SDC1-203ENST00000403076 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.64■□□□□ 0.73
SDC1-203ENST00000403076 FAM189A1O60320 539 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 SKIP12755 728 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 VAMP7P51809 220 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 COPB1P53618 953 aaKnown RBP19.63■□□□□ 0.73
SDC1-203ENST00000403076 BFSP1Q12934 665 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 MAN2A1Q16706 1144 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 FILIP1LQ4L180 1135 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 FAM43BQ6ZT52 329 aaPredicted RBP19.63■□□□□ 0.73
SDC1-203ENST00000403076 BRSK2Q8IWQ3 736 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 RNF169Q8NCN4 708 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 FNBP1Q96RU3 617 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 RGS18Q9NS28 235 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 TANC1Q9C0D5 1861 aa19.63■□□□□ 0.73
SDC1-203ENST00000403076 CXCL8P10145 99 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 DLATP10515 647 aaKnown RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 ITGA4P13612 1032 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 MRE11P49959 708 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 SURF1Q15526 300 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 ENOX2Q16206 610 aaKnown RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 CNKSR3Q6P9H4 555 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 SLC24A5Q71RS6 500 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 RTN4RL1Q86UN2 441 aaPredicted RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 TRIM59Q8IWR1 403 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 SMG8Q8ND04 991 aaKnown RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 TMC2Q8TDI7 906 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 BORCS6Q96GS4 357 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 TSPYL2Q9H2G4 693 aaPredicted RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 RNF39Q9H2S5 420 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 PDE11AQ9HCR9 933 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 C1orf112Q9NSG2 853 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 ZMYND8Q9ULU4 1186 aaPredicted RBP19.62■□□□□ 0.73
SDC1-203ENST00000403076 SCN5AQ14524 2016 aa19.62■□□□□ 0.73
SDC1-203ENST00000403076 A0A0U1RQF3 1178 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 IL18RAPO95256 599 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TRIM49P0CI25 452 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TRIM49CP0CI26 452 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 SYN1P17600 705 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 AKAP5P24588 427 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 UBASH3AP57075 661 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 PPP2R3AQ06190 1150 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 IKBKEQ14164 716 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 PSMD6Q15008 389 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 PARD3BQ8TEW8 1205 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 BADQ92934 168 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 PGBD4Q96DM1 585 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TRAIPQ9BWF2 469 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TRIM5Q9C035 493 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 MMRN2Q9H8L6 949 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TOPORSQ9NS56 1045 aaPredicted RBP19.61■□□□□ 0.73
SDC1-203ENST00000403076 IFNKQ9P0W0 207 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 ALPK3Q96L96 1907 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 ENPP3O14638 875 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 ZNF623O75123 536 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 RECQL4O94761 1208 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 TNNI1P19237 187 aa19.61■□□□□ 0.73
SDC1-203ENST00000403076 POU5F1Q01860 360 aaKnown RBP19.61■□□□□ 0.73
SDC1-203ENST00000403076 PPIGQ13427 754 aaKnown RBP eCLIP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms