RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FGFR1OPO95684 399 aaKnown RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 KRT9P35527 623 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 RAB27AP51159 221 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 MBTD1Q05BQ5 628 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 NFX1Q12986 1120 aaKnown RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 NOTUMQ6P988 496 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 CYP26C1Q6V0L0 522 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 SLC24A5Q71RS6 500 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 MYOCDQ8IZQ8 938 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 TMEM161BQ8NDZ6 487 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 SLC9A7Q96T83 725 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.11□□□□□ -0.639e-7■■□□□ 12.3
VPS53-202ENST00000389040 CCDC113Q9H0I3 377 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 MRPL44Q9H9J2 332 aaKnown RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 RGS18Q9NS28 235 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 PANK4Q9NVE7 773 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 TNRC18O15417 2968 aaPredicted RBP11.1□□□□□ -0.63
VPS53-202ENST00000389040 A0A1B0GUA9 196 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 TTC26A0AVF1 554 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 DENND3A2RUS2 1198 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 ENPP3O14638 875 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 FANCGO15287 622 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 EOMESO95936 686 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 AMHP03971 560 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 GNG11P61952 73 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 FAM189BP81408 668 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 GTF2BQ00403 316 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 STRN3Q13033 797 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 DSC3Q14574 896 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 HERC4Q5GLZ8 1057 aaPredicted RBP11.1□□□□□ -0.63
VPS53-202ENST00000389040 MIIPQ5JXC2 388 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 FAM26FQ5R3K3 315 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 ZNF720Q7Z2F6 126 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 GLIS3Q8NEA6 775 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 BSNDQ8WZ55 320 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 TSG101Q99816 390 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 NUP58Q9BVL2 599 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 PDCL3Q9H2J4 239 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 CAPN11Q9UMQ6 739 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 LUC7L2Q9Y383 392 aaKnown RBP11.1□□□□□ -0.63
VPS53-202ENST00000389040 SLC4A7Q9Y6M7 1214 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 WDR81Q562E7 1941 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 ALPK3Q96L96 1907 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 CNTNAP2Q9UHC6 1331 aa11.1□□□□□ -0.63
VPS53-202ENST00000389040 A0A0U1RQF3 1178 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 ZNF623O75123 536 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 STAG3L1P0CL83 205 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 ACRP10323 421 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 EPHB4P54760 987 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 RAD51AP2Q09MP3 1159 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 FKBP15Q5T1M5 1219 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 ZPBP2Q6X784 338 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 LRRC55Q6ZSA7 311 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 HAUS6Q7Z4H7 955 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 OR8K1Q8NGG5 319 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 DNAJC7Q99615 494 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 MRPL4Q9BYD3 311 aaKnown RBP11.09□□□□□ -0.63
VPS53-202ENST00000389040 MINDY3Q9H8M7 445 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 NPHP3-ACAD11A0A0J9YXS1 232 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 SFI1A8K8P3 1242 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 HOXA2O43364 376 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 TSPAN1O60635 241 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 KIF20AO95235 890 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 HOXA11P31270 313 aaPredicted RBP11.09□□□□□ -0.63
VPS53-202ENST00000389040 SNRPFP62306 86 aaKnown RBP11.09□□□□□ -0.63
VPS53-202ENST00000389040 PRPF4BQ13523 1007 aaKnown RBP11.09□□□□□ -0.63
VPS53-202ENST00000389040 AMHR2Q16671 573 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 LRIT3Q3SXY7 679 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 VWA3BQ502W6 1294 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 OTOP2Q7RTS6 562 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 HACE1Q8IYU2 909 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 TOP1MTQ969P6 601 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 RNPC3Q96LT9 517 aaKnown RBP11.09□□□□□ -0.63
VPS53-202ENST00000389040 FIZ1Q96SL8 496 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 PPP1R16BQ96T49 567 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 ADAM2Q99965 735 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 STRA6Q9BX79 667 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 TTYH3Q9C0H2 523 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 ZHX3Q9H4I2 956 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 TMEM206Q9H813 350 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 UBN1Q9NPG3 1134 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 EXOC7Q9UPT5 735 aa11.09□□□□□ -0.63
VPS53-202ENST00000389040 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 CARNS1A5YM72 827 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 EIF3DO15371 548 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS53-202ENST00000389040 SLC16A4O15374 487 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 PIGRP01833 764 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 PRKCBP05771 671 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 TRIM21P19474 475 aaKnown RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 CASQ1P31415 396 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 WDR5P61964 334 aaKnown RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 SHHQ15465 462 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 MAN2A1Q16706 1144 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 KYAT1Q16773 422 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 TSR1Q2NL82 804 aaKnown RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 ZCWPW2Q504Y3 356 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 SLC27A1Q6PCB7 646 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 PLCD3Q8N3E9 789 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 PGBD4Q96DM1 585 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms