RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CXorf56Q9H5V9 222 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 C20orf96Q9NUD7 363 aaPredicted RBP12.26□□□□□ -0.45
VPS13A-205ENST00000376636 FBXL5Q9UKA1 691 aa12.26□□□□□ -0.45
VPS13A-205ENST00000376636 ARPP19P56211 112 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 TINF2Q9BSI4 451 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ZBED2Q9BTP6 218 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 AFF4Q9UHB7 1163 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 CFAP99D6REC4 459 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 HUS1O60921 280 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 VSNL1P62760 191 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 COG2Q14746 738 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 P3H1Q32P28 736 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 LRRC8DQ7L1W4 858 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 KRT73Q86Y46 540 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF507Q8TCN5 953 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 CNPY3Q9BT09 278 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ARHGEF12Q9NZN5 1544 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 RAPGEF6Q8TEU7 1601 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SNPHO15079 494 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SCRN1Q12765 414 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF544Q6NX49 715 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 DSTYKQ6XUX3 929 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SRP72O76094 671 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 HIST1H2AGP0C0S8 130 aaPredicted RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 HIST1H2ADP20671 130 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SDC4P31431 198 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 GTF2H3Q13889 308 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 CCDC137Q6PK04 289 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SFR1Q86XK3 245 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 STAG2Q8N3U4 1231 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 GLMNQ92990 594 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 HIST1H2AHQ96KK5 128 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 HIST1H2AJQ99878 128 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 H2AFJQ9BTM1 129 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 KLHL20Q9Y2M5 609 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ACADSP16219 412 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 JAK3P52333 1124 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 PDAP1Q13442 181 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 TTC30AQ86WT1 665 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 CNDP1Q96KN2 507 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 SRPRBQ9Y5M8 271 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 FAM187AA6NFU0 413 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 EVPLLA8MZ36 301 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 ANXA11P50995 505 aaKnown RBP12.25□□□□□ -0.45
VPS13A-205ENST00000376636 AFG1LQ8WV93 481 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 CHMP2BQ9UQN3 213 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 TAB1Q15750 504 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 MOSPD2Q8NHP6 518 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 UNC45AQ9H3U1 944 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 MARK3P27448 753 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 RFX8Q6ZV50 586 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 PITPNM2Q9BZ72 1349 aa12.25□□□□□ -0.45
VPS13A-205ENST00000376636 APOL1O14791 398 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 MMP1P03956 469 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 XPO6Q96QU8 1125 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 FOXP3Q9BZS1 431 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PCIF1Q9H4Z3 704 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 TSC22D2O75157 780 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CYP19A1P11511 503 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 SLC16A1P53985 500 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 NPHS2Q9NP85 383 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 ASNA1O43681 348 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 SLFN13Q68D06 897 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 KRT74Q7RTS7 529 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 UBA2Q9UBT2 640 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 USP15Q9Y4E8 981 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CENPAP49450 140 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CSE1LP55060 971 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CALML6Q8TD86 181 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 IL12RB1P42701 662 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PLOD1Q02809 727 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 ZNF564Q8TBZ8 553 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 MLXIPLQ9NP71 852 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 MRPL39Q9NYK5 338 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 ADAMTS1Q9UHI8 967 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 NT5C2P49902 561 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 LRRC36Q1X8D7 754 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 SERHL2Q9H4I8 314 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 SERHLQ9NQF3 203 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 UHRF1BP1LA0JNW5 1464 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 H2AFYO75367 372 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PLCG1P19174 1290 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CCNE1P24864 410 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PDIA3P30101 505 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CC2D1AQ6P1N0 951 aaPredicted RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 OR6B3Q8NGW1 331 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 URGCPQ8TCY9 931 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 LRRC59Q96AG4 307 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 RANBP17Q9H2T7 1088 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 HSPBP1Q9NZL4 362 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 USP1O94782 785 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 ZBTB33Q86T24 672 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CNOT8Q9UFF9 292 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PIPSLA2A3N6 862 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PPP3CCP48454 512 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 HSD17B4P51659 736 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 DCAF4L1Q3SXM0 396 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 DDX17Q92841 729 aaKnown RBP12.24□□□□□ -0.45
VPS13A-205ENST00000376636 CENPTQ96BT3 561 aa12.24□□□□□ -0.45
VPS13A-205ENST00000376636 PLA2G4AP47712 749 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms