RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 KRT17Q04695 432 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 NCAPHQ15003 741 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ELMO2Q96JJ3 720 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 GBP5Q96PP8 586 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 NDOR1Q9UHB4 597 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 GSG1L2A8MUP6 293 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 MEFVO15553 781 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PCDH8O95206 1070 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 BRD2P25440 801 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PMM1Q92871 262 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.79□□□□□ -1.162e-8■■■■■ 39.2
VPS13A-202ENST00000357409 TMEM117Q9H0C3 514 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 RHBGQ9H310 441 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 HOMER3Q9NSC5 361 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TMEM39AQ9NV64 488 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TAF6LQ9Y6J9 622 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ROBO2Q9HCK4 1378 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 COASYQ13057 564 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CDHR1Q96JP9 859 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 RUBCNLQ9H714 662 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ATP6V0A4Q9HBG4 840 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 SLC25A13Q9UJS0 675 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ARHGAP26Q9UNA1 814 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 FAF1Q9UNN5 650 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PPP6R2O75170 966 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 KRT10P13645 584 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 VCAM1P19320 739 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TCF7P36402 384 aaPredicted RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 ANGPT1Q15389 498 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 SYTL3Q4VX76 610 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 NFRKBQ6P4R8 1299 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 PDXDC1Q6P996 788 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 C10orf53Q8N6V4 93 aa7.79□□□□□ -1.16
VPS13A-202ENST00000357409 TMA16Q96EY4 203 aaKnown RBP7.79□□□□□ -1.16
VPS13A-202ENST00000357409 CYP2C19P33261 490 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PDAP1Q13442 181 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SNAP47Q5SQN1 464 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 C2orf73Q8N5S3 287 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 IPMKQ8NFU5 416 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 GPR152Q8TDT2 470 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TRAPPC12Q8WVT3 735 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 OPTNQ96CV9 577 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 METTL5Q9NRN9 209 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 COPEO14579 308 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ACO1P21399 889 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 BEX3Q00994 111 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 IL9RQ01113 521 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 DR1Q01658 176 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 USP49Q70CQ1 688 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZBED8Q8IZ13 594 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 DNAJB3Q8WWF6 145 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 NUDT12Q9BQG2 462 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZCCHC17Q9NP64 241 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 AMACRQ9UHK6 382 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZBTB39O15060 712 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SLC9A1P19634 815 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 FGFR2P21802 821 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 FOXO4P98177 505 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ATL3Q6DD88 541 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ICA1LQ8NDH6 482 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 RDM1Q8NG50 284 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 DACH2Q96NX9 599 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 WARS2Q9UGM6 360 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SETSIPP0DME0 302 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 CYP2C9P11712 490 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 COPS2P61201 443 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ALDH6A1Q02252 535 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TNFAIP2Q03169 654 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SPDYE7PQ495Y7 208 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 HAUS6Q7Z4H7 955 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SEMA4DQ92854 862 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 GLT1D1Q96MS3 346 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 MFSD1Q9H3U5 465 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SETD4Q9NVD3 440 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 L3MBTL1Q9Y468 752 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ARHGAP10A1A4S6 786 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 LZTS3O60299 673 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PMPCBO75439 489 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 NDUFA10O95299 355 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 RALAP11233 206 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ALDH7A1P49419 539 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ITPK1Q13572 414 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TRIM48Q8IWZ4 208 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 STARD7Q9NQZ5 370 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PPP1R9AQ9ULJ8 1098 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TDRKHQ9Y2W6 561 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 H7C1W4 665 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TRDMT1O14717 391 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PJA2O43164 708 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PRPF3O43395 683 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ADCY3O60266 1144 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 LDHAP00338 332 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TCEA1P23193 301 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 KLRC2P26717 231 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 WASP42768 502 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 LRRC8EQ6NSJ5 796 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TPGS1Q6ZTW0 290 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PARD6BQ9BYG5 372 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 BRD8Q9H0E9 1235 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms