RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PRRX2Q99811 253 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 KAT14Q9H8E8 782 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 NCOA5Q9HCD5 579 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 VTA1Q9NP79 307 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 SH3GLB2Q9NR46 395 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 LMBRD1Q9NUN5 540 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 CRIM1Q9NZV1 1036 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 NYAP2Q9P242 653 aa7.89□□□□□ -1.15
VPS13A-201ENST00000355766 DDX49Q9Y6V7 483 aaKnown RBP7.89□□□□□ -1.15
VPS13A-201ENST00000355766 MYH8P13535 1937 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 PTPRSQ13332 1948 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 BRWD1Q9NSI6 2320 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 MYL3P08590 195 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 SNHG28P0DPA3 235 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 U2AF2P26368 475 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 CPT1AP50416 773 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 TFAP4Q01664 338 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 AKAP17AQ02040 695 aaKnown RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 PTPN11Q06124 597 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 TCF15Q12870 199 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 SAFBQ15424 915 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 DUSP28Q4G0W2 176 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 NFRKBQ6P4R8 1299 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 CNKSR3Q6P9H4 555 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 EEPD1Q7L9B9 569 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 BMP8AQ7Z5Y6 402 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 CAGE1Q8TC20 777 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 AFAP1L1Q8TED9 768 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 PABPC5Q96DU9 382 aaKnown RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 MRPL38Q96DV4 380 aaKnown RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 MTG1Q9BT17 334 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 SPZ1Q9BXG8 430 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 FOXP1Q9H334 677 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 RNF146Q9NTX7 359 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 MUTYHQ9UIF7 546 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 FEM1BQ9UK73 627 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 NAP1L2Q9ULW6 460 aaPredicted RBP7.88□□□□□ -1.15
VPS13A-201ENST00000355766 CFAP54Q96N23 3096 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 SCN5AQ14524 2016 aa7.88□□□□□ -1.15
VPS13A-201ENST00000355766 SIP14410 1827 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 COL4A6Q14031 1691 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 PRDM1O75626 825 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 LETM1O95202 739 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-201ENST00000355766 YEATS4O95619 227 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 TTLL1O95922 423 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 BMP15O95972 392 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 CALML3P27482 149 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 TRAPPC10P48553 1259 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 PTPROQ16827 1216 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 TKFCQ3LXA3 575 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 ASPRV1Q53RT3 343 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 GPATCH4Q5T3I0 446 aaKnown RBP7.87□□□□□ -1.15
VPS13A-201ENST00000355766 AGBL5Q8NDL9 886 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 CCDC148Q8NFR7 591 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 KCNG4Q8TDN1 519 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 MORC4Q8TE76 937 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 CCDC12Q8WUD4 166 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-201ENST00000355766 BCL7CQ8WUZ0 217 aaPredicted RBP7.87□□□□□ -1.15
VPS13A-201ENST00000355766 FANCD2OSQ96PS1 177 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 C17orf80Q9BSJ5 609 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 ALG1Q9BT22 464 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 RBCK1Q9BYM8 510 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 BRMS1Q9HCU9 246 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 IL17RBQ9NRM6 502 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 MTMR4Q9NYA4 1195 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 MCM3APO60318 1980 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 MYH15Q9Y2K3 1946 aa7.87□□□□□ -1.15
VPS13A-201ENST00000355766 ABHD14A-ACY1A0A1B0GW23 586 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 EFCAB14O75071 495 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 PARNO95453 639 aaKnown RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 CXCL10P02778 98 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 MMP1P03956 469 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 GSTP1P09211 210 aaKnown RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 SLFN14P0C7P3 912 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 ITGB5P18084 799 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 NASPP49321 788 aaPredicted RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 ZNF445P59923 1031 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 ID3Q02535 119 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 RBL2Q08999 1139 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 CDK5R2Q13319 367 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 GPNMBQ14956 572 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 SMAD2Q15796 467 aaKnown RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 PKN1Q16512 942 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 PFKFB3Q16875 520 aaPredicted RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 TCTN1Q2MV58 587 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 RILPL1Q5EBL4 403 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 TCEAL5Q5H9L2 206 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 LRRC8DQ7L1W4 858 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 SUGP1Q8IWZ8 645 aaKnown RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 DAGLBQ8NCG7 672 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 GMCL1P1Q8NEA9 526 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 OR6J1Q8NGC5 347 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 PPP1R13LQ8WUF5 828 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 EDAQ92838 391 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 MKL1Q969V6 931 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 ALKBH8Q96BT7 664 aaKnown RBP7.86□□□□□ -1.15
VPS13A-201ENST00000355766 DMRTB1Q96MA1 342 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 SLC26A6Q9BXS9 759 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 PIDD1Q9HB75 910 aa7.86□□□□□ -1.15
VPS13A-201ENST00000355766 INCENPQ9NQS7 918 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms