RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PSMC2P35998 433 aaKnown RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 MLH1P40692 756 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 LRRC63Q05C16 580 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 AMHR2Q16671 573 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 FBXO47Q5MNV8 452 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 NOTUMQ6P988 496 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 MTMR12Q9C0I1 747 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 CRISPLD2Q9H0B8 497 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 TRIM43BA6NCK2 446 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 ZNF233A6NK53 670 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 EIF3DO15371 548 aaKnown RBP eCLIP10.01□□□□□ -0.81
USP4-202ENST00000351842 RECQL4O94761 1208 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 TPM2P07951 284 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 SSTR3P32745 418 aaPredicted RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 CA8P35219 290 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 PTK7Q13308 1070 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 BFSP2Q13515 415 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 RAPGEF1Q13905 1077 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 ARID5BQ14865 1188 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 GJB7Q6PEY0 223 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 MPZL3Q6UWV2 235 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 GPD1LQ8N335 351 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 TRIM43Q96BQ3 446 aaPredicted RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 NTPCRQ9BSD7 190 aaKnown RBP10.01□□□□□ -0.81
USP4-202ENST00000351842 WNT8AQ9H1J5 351 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 CHD9Q3L8U1 2897 aa10.01□□□□□ -0.81
USP4-202ENST00000351842 COPB1P53618 953 aaKnown RBP10□□□□□ -0.81
USP4-202ENST00000351842 TERF1P54274 439 aa10□□□□□ -0.81
USP4-202ENST00000351842 KCNH2Q12809 1159 aa10□□□□□ -0.81
USP4-202ENST00000351842 FILIP1LQ4L180 1135 aa10□□□□□ -0.81
USP4-202ENST00000351842 SPOPLQ6IQ16 392 aa10□□□□□ -0.81
USP4-202ENST00000351842 ZNF410Q86VK4 478 aa10□□□□□ -0.81
USP4-202ENST00000351842 ELOA2Q8IYF1 753 aaPredicted RBP10□□□□□ -0.81
USP4-202ENST00000351842 LINC01465Q8N7H1 131 aa10□□□□□ -0.81
USP4-202ENST00000351842 BADQ92934 168 aa10□□□□□ -0.81
USP4-202ENST00000351842 FZD8Q9H461 694 aa10□□□□□ -0.81
USP4-202ENST00000351842 RPF1Q9H9Y2 349 aaKnown RBP10□□□□□ -0.81
USP4-202ENST00000351842 NXF1Q9UBU9 619 aaKnown RBP10□□□□□ -0.81
USP4-202ENST00000351842 PCDHB2Q9Y5E7 798 aa10□□□□□ -0.81
USP4-202ENST00000351842 CASTOR2A6NHX0 329 aa10□□□□□ -0.81
USP4-202ENST00000351842 BCAR1P56945 870 aa10□□□□□ -0.81
USP4-202ENST00000351842 RNASELQ05823 741 aaKnown RBP10□□□□□ -0.81
USP4-202ENST00000351842 SYCP1Q15431 976 aa10□□□□□ -0.81
USP4-202ENST00000351842 ARHGAP44Q17R89 818 aa10□□□□□ -0.81
USP4-202ENST00000351842 ZCWPW2Q504Y3 356 aa10□□□□□ -0.81
USP4-202ENST00000351842 SPOUT1Q5T280 376 aaKnown RBP10□□□□□ -0.81
USP4-202ENST00000351842 RRAGAQ7L523 313 aa10□□□□□ -0.81
USP4-202ENST00000351842 KCTD17Q8N5Z5 321 aa10□□□□□ -0.81
USP4-202ENST00000351842 OR5B17Q8NGF7 314 aa10□□□□□ -0.81
USP4-202ENST00000351842 PLEKHO2Q8TD55 490 aa10□□□□□ -0.81
USP4-202ENST00000351842 C18orf25Q96B23 403 aaPredicted RBP10□□□□□ -0.81
USP4-202ENST00000351842 KIF12Q96FN5 646 aa10□□□□□ -0.81
USP4-202ENST00000351842 PLAGL2Q9UPG8 496 aa10□□□□□ -0.81
USP4-202ENST00000351842 ARID2Q68CP9 1835 aa10□□□□□ -0.81
USP4-202ENST00000351842 NT5C1B-RDH14C9J2C7 533 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 H0YCG3 227 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 NFICP08651 508 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 TRIM21P19474 475 aaKnown RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 ORC1Q13415 861 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CBWD6Q4V339 395 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 ZNF394Q53GI3 561 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CBWD3Q5JTY5 395 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CBWD5Q5RIA9 395 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 ACAP3Q96P50 834 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 PRG3Q9Y2Y8 225 aaPredicted RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 SCN5AQ14524 2016 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 PTPRJQ12913 1337 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 I3L4J1 428 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 GPR182O15218 404 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CALCAP01258 141 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 TMEM191BP0C7N4 346 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 IGFBP6P24592 240 aaPredicted RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 CDK7P50613 346 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 SCNN1GP51170 649 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 VAMP7P51809 220 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 YARSP54577 528 aaKnown RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 PPP3CAQ08209 521 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.99□□□□□ -0.81
USP4-202ENST00000351842 SRGAP1Q7Z6B7 1085 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 ABI1Q8IZP0 508 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 RPS6KC1Q96S38 1066 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CCDC94Q9BW85 323 aaPredicted RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 CCDC113Q9H0I3 377 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 AGPAT5Q9NUQ2 364 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 LRFN2Q9ULH4 789 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 IPPQ9Y573 584 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 TRIP11Q15643 1979 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 LACTBL1A8MY62 500 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 SLC9A1P19634 815 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 ADKP55263 362 aaKnown RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 TCTN1Q2MV58 587 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 CDCA2Q69YH5 1023 aaPredicted RBP9.99□□□□□ -0.81
USP4-202ENST00000351842 SLC27A1Q6PCB7 646 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 ZSCAN30Q86W11 494 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 HELQQ8TDG4 1101 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 NDST4Q9H3R1 872 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 FAM105AQ9NUU6 356 aa9.99□□□□□ -0.81
USP4-202ENST00000351842 A0A0B4J269 797 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 F8W810 466 aa9.98□□□□□ -0.81
USP4-202ENST00000351842 IKBKBO14920 756 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms