RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 COPG2Q9UBF2 871 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 LIMA1Q9UHB6 759 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SERPINB13Q9UIV8 391 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 COBLO75128 1261 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 YY1P25490 414 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 HIBADHP31937 336 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 UGP2Q16851 508 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 EFL1Q7Z2Z2 1120 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 P3H2Q8IVL5 708 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 GSPT2Q8IYD1 628 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ZWILCHQ9H900 591 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 NRBP2Q9NSY0 501 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PCDHA4Q9UN74 947 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ACEP12821 1306 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ASXL3Q9C0F0 2248 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SMIM31A0A1B0GVY4 71 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SCP2P22307 547 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TYK2P29597 1187 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TGFBR2P37173 567 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ITGA1P56199 1179 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 AP1S2P56377 157 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PDAP1Q13442 181 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 MAPRE1Q15691 268 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 C6orf10Q5SRN2 563 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 FBXO31Q5XUX0 539 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RAB42Q8N4Z0 105 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PLBD2Q8NHP8 589 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 LPIN2Q92539 896 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PPP1R2P1Q96PQ5 205 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 DNAJC12Q9UKB3 198 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SHANK2Q9UPX8 1470 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KLHL18O94889 574 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 STXBP2Q15833 593 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ASPRV1Q53RT3 343 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SLC10A5Q5PT55 438 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RWDD4Q6NW29 188 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CYB5D1Q6P9G0 228 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 KLHL17Q6TDP4 642 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 OR8H2Q8N162 312 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CNBD1Q8NA66 436 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 STKLD1Q8NE28 680 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 VCPKMTQ9H867 229 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 STK39Q9UEW8 545 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 EPS8Q12929 822 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PDIA2Q13087 525 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RIBC1Q8N443 379 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PI4K2BQ8TCG2 481 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 THTPAQ9BU02 230 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 C20orf96Q9NUD7 363 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 MAGED2Q9UNF1 606 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 NPATQ14207 1427 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 BTN3A3O00478 584 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 MED26O95402 600 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CCNE1P24864 410 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 GPC5P78333 572 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CYP4A11Q02928 519 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TAP1Q03518 808 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CYP4A22Q5TCH4 519 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 NACC1Q96RE7 527 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 AKAP5P24588 427 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 HPCAP84074 193 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PKP1Q13835 747 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CCDC137Q6PK04 289 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 MTHFD1LQ6UB35 978 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PLA2G4DQ86XP0 818 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SPATA17Q96L03 361 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 EGFL8Q99944 293 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 BFARQ9NZS9 450 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 WDR17Q8IZU2 1322 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PIPSLA2A3N6 862 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TRPC5OSA6NMA1 111 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SRGAP2O75044 1071 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 RASGRF1Q13972 1273 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TRIM72Q6ZMU5 477 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 SMYD4Q8IYR2 804 aaPredicted RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 PNMA1Q8ND90 353 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CASS4Q9NQ75 786 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 CACNA2D2Q9NY47 1150 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 ENOPH1Q9UHY7 261 aa6.5□□□□□ -1.37
CSMD1-201ENST00000335551 FNDC3AQ9Y2H6 1198 aaKnown RBP6.5□□□□□ -1.37
CSMD1-201ENST00000335551 TNPO2O14787 897 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 POU5F1BQ06416 359 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 C1DQ13901 141 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 HEATR6Q6AI08 1181 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 GPKOWQ92917 476 aaPredicted RBP eCLIP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 PPP1R14BQ96C90 147 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 MRPL39Q9NYK5 338 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 NSFL1CQ9UNZ2 370 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 MYL2P10916 166 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 TFAMQ00059 246 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 CCDC81Q6ZN84 652 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 NANOGNBQ7Z5D8 188 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 TTC39CQ8N584 583 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 DCAF5Q96JK2 942 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 DHX36Q9H2U1 1008 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 HMG20AQ9NP66 347 aa6.49□□□□□ -1.37
CSMD1-201ENST00000335551 HERC5Q9UII4 1024 aaKnown RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 ITGB3BPQ13352 177 aaPredicted RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 SHROOM1Q2M3G4 852 aaPredicted RBP6.49□□□□□ -1.37
CSMD1-201ENST00000335551 P3H1Q32P28 736 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms