RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 USP17L22D6RA61 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L17D6RBQ6 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L19D6RCP7 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L20D6RJB6 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 RASA4O43374 803 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 TTC4O95801 387 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 TTLL1O95922 423 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 UBTFL6P0CB48 400 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ACADSP16219 412 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L24Q0WX57 530 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 RCN1Q15293 331 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SNX30Q5VWJ9 437 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 USP17L6PQ6QN14 398 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CAPN12Q6ZSI9 719 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CROCCP2Q86T23 111 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 LRRC8CQ8TDW0 803 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 FGD4Q96M96 766 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 LZTS2Q9BRK4 669 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CHST7Q9NS84 486 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SYNGAP1Q96PV0 1343 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 KIAA1551Q9HCM1 1747 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CAMTA2O94983 1202 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ZCCHC18P0CG32 403 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CDK8P49336 464 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ITGA8P53708 1063 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SGSM1Q2NKQ1 1148 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SEL1L2Q5TEA6 688 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 TTBK2Q6IQ55 1244 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 TRMT10CQ7L0Y3 403 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SLC13A5Q86YT5 568 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 UBL4BQ8N7F7 174 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ENDOVQ8N8Q3 282 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 TAOK3Q9H2K8 898 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 PASKQ96RG2 1323 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 COL14A1Q05707 1796 aaKnown RBP14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ANKRD62A6NC57 917 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 SIGLEC16A6NMB1 481 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ECEL1O95672 775 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 PYGBP11216 843 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 FGFR1P11362 822 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CACNA2D1P54289 1103 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CYP4F22Q6NT55 531 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 RNF207Q6ZRF8 634 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 ARHGEF18Q6ZSZ5 1173 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 CATSPER3Q86XQ3 398 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 C4orf33Q8N1A6 199 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 STK33Q9BYT3 514 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 KCNQ5Q9NR82 932 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 NINJ2Q9NZG7 142 aa14.37□□□□□ -0.11
CCDC88C-201ENST00000331194 A0A1W2PRG0 241 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 PHLDB3Q6NSJ2 640 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 MTDHQ86UE4 582 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 IFT43Q96FT9 208 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 DCTN4Q9UJW0 460 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 CCNL1Q9UK58 526 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 AHDC1Q5TGY3 1603 aaPredicted RBP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 WDR91A4D1P6 747 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 MAPK13O15264 365 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 PIAS1O75925 651 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 KCNA3P22001 575 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 NMT1P30419 496 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 SERPINB4P48594 390 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 STRN3Q13033 797 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 TBC1D9BQ66K14 1250 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 PPP4R3CPQ6ZMV5 832 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 ARHGAP22Q7Z5H3 698 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 SEPT12Q8IYM1 358 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 ELMO3Q96BJ8 720 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 HERPUD2Q9BSE4 406 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 C12orf65Q9H3J6 166 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 USP20Q9Y2K6 914 aa14.36□□□□□ -0.11
CCDC88C-201ENST00000331194 TGFB1I1O43294 461 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CALUO43852 315 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CYP2J2P51589 502 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 YARSP54577 528 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CCDC15Q0P6D6 951 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 ACVR2BQ13705 512 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 MOGSQ13724 837 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 KPNB1Q14974 876 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 VPS72Q15906 364 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 PHLDB2Q86SQ0 1253 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 PRR11Q96HE9 360 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 SCOCQ9UIL1 159 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 USH1CQ9Y6N9 552 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 SPOPO43791 374 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 OVGP1Q12889 678 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CUL3Q13618 768 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 PLEKHG4Q58EX7 1191 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 ACSBG2Q5FVE4 666 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 DAB2IPQ5VWQ8 1189 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 KBTBD2Q8IY47 623 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 RBM41Q96IZ5 413 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 ANKRD27Q96NW4 1050 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 GPR101Q96P66 508 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CADM1Q9BY67 442 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 UBN1Q9NPG3 1134 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 LAMB1P07942 1786 aa14.35□□□□□ -0.11
CCDC88C-201ENST00000331194 CAPN9O14815 690 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms