RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TMEM161AQ9NX61 479 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 SYNGAP1Q96PV0 1343 aa8.34□□□□□ -1.07
CIITA-201ENST00000324288 K7ERI5 159 aa8.34□□□□□ -1.08
CIITA-201ENST00000324288 SNUPNO95149 360 aaKnown RBP8.34□□□□□ -1.08
CIITA-201ENST00000324288 C6orf10Q5SRN2 563 aa8.34□□□□□ -1.08
CIITA-201ENST00000324288 CCDC60Q8IWA6 550 aaPredicted RBP8.34□□□□□ -1.08
CIITA-201ENST00000324288 ERVV-2B6SEH9 535 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 AKAP10O43572 662 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZNF667Q5HYK9 610 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 FASTKD5Q7L8L6 764 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 AGGF1Q8N302 714 aaeCLIP8.33□□□□□ -1.08
CIITA-201ENST00000324288 DTNAQ9Y4J8 743 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ERBB3P21860 1342 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZNF568Q3ZCX4 644 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZMYM1Q5SVZ6 1142 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 LMBRD2Q68DH5 695 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 TLK2Q86UE8 772 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 C4orf33Q8N1A6 199 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 CATSPER1Q8NEC5 780 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 NMD3Q96D46 503 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 CAPN10Q9HC96 672 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SRP68Q9UHB9 627 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 MAD2L2Q9UI95 211 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 TFR2Q9UP52 801 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZNF608Q9ULD9 1512 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 RSPH10B2B2RC85 870 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 LZTS3O60299 673 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 RSPH10BP0C881 870 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 GPC5P78333 572 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 GPATCH4Q5T3I0 446 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 LRRC8BQ6P9F7 803 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SFR1Q86XK3 245 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 HPS3Q969F9 1004 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 TSSK1BQ9BXA7 367 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 COPG1Q9Y678 874 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 FOXN1O15353 648 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 PDE8BO95263 885 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 GH2P01242 217 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 NLRP11P59045 1033 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 PDAP1Q13442 181 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 KLHL38Q2WGJ6 581 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 DDX53Q86TM3 631 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 VPS50Q96JG6 964 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 XPO6Q96QU8 1125 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 NOD2Q9HC29 1040 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 TEX14Q8IWB6 1497 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 BNIPLQ7Z465 357 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 C11orf96Q7Z7L8 435 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ELMOD1Q8N336 334 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZNF518AQ6AHZ1 1483 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ADGRA2Q96PE1 1338 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 CHRNA3P32297 505 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 MAPK10P53779 464 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 DRAP1Q14919 205 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 ZNF564Q8TBZ8 553 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 FAM118BQ9BPY3 351 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 AP3B1O00203 1094 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 CYP21A2P08686 494 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SEC24CP53992 1094 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 GRIN1Q05586 938 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 MED21Q13503 144 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 MICU2Q8IYU8 434 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 MTERF3Q96E29 417 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 KANSL2Q9H9L4 492 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 MRPL40Q9NQ50 206 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 SEL1LQ9UBV2 794 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 PLXNC1O60486 1568 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 LOC102724428A0A0B4J2F2 783 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 PARNO95453 639 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 SIK1P57059 783 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 CORO7P57737 925 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 TMC5Q6UXY8 1006 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 RHPN2Q8IUC4 686 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 RNPC3Q96LT9 517 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 OSBPL5Q9H0X9 879 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 ADGBQ8N7X0 1667 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 PNMA6FA0A0J9YX94 578 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 IPO5O00410 1097 aaKnown RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 P3H1Q32P28 736 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 NDUFAF2Q8N183 169 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SSH3Q8TE77 659 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ASIC4Q96FT7 647 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 ATP10DQ9P241 1426 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SERPINB13Q9UIV8 391 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 USP15Q9Y4E8 981 aaPredicted RBP8.33□□□□□ -1.08
CIITA-201ENST00000324288 OLFML1Q6UWY5 402 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 CLEC4FQ8N1N0 589 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 EME1Q96AY2 570 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 TUBGCP3Q96CW5 907 aa8.33□□□□□ -1.08
CIITA-201ENST00000324288 SEMA3EO15041 775 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 MYBP10242 640 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 CIITAP33076 1130 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 MDH1P40925 334 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 CLK1P49759 484 aaKnown RBP8.32□□□□□ -1.08
CIITA-201ENST00000324288 SPDYAQ5MJ70 313 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 OXER1Q8TDS5 423 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 PIDD1Q9HB75 910 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DIABLOQ9NR28 239 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 DOPEY2Q9Y3R5 2298 aa8.32□□□□□ -1.08
CIITA-201ENST00000324288 A0A1B0GW55 424 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms