RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 PPP1R10Q96QC0 940 aaKnown RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 MTMR9Q96QG7 549 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 HEPHQ9BQS7 1158 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SEZ6LQ9BYH1 1024 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 ANKRD2Q9GZV1 360 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 ASCC2Q9H1I8 757 aaPredicted RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SMARCAL1Q9NZC9 954 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 CEP72Q9P209 647 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SUGT1Q9Y2Z0 365 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 HBS1LQ9Y450 684 aaKnown RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 NDUFB9Q9Y6M9 179 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 PITPNM2Q9BZ72 1349 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 RNF225M0QZC1 329 aaPredicted RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 TNFRSF10AO00220 468 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 PMM2O15305 246 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 CYTH3O43739 400 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 IL4RP24394 825 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 DRG2P55039 364 aaKnown RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 EDRF1Q3B7T1 1238 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 VWA3BQ502W6 1294 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SPDYAQ5MJ70 313 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 METTL21CQ5VZV1 264 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 KAZNQ674X7 775 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 DPY19L2P1Q6NXN4 242 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 ZBED8Q8IZ13 594 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SIX5Q8N196 739 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 MAGEB6Q8N7X4 407 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 PPP1R14CQ8TAE6 165 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 TTC8Q8TAM2 541 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 TLCD1Q96CP7 247 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 DYDC2Q96IM9 177 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 HGH1Q9BTY7 390 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 C2orf49Q9BVC5 232 aaPredicted RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 DHX36Q9H2U1 1008 aaKnown RBP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 PSTPIP2Q9H939 334 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 TXLNGQ9NUQ3 528 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.09□□□□□ -1.27
ZNF540-201ENST00000316433 NDUFA13Q9P0J0 144 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 TRIM17Q9Y577 477 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 CAPN6Q9Y6Q1 641 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SLC4A4Q9Y6R1 1079 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 SPATA31A1Q5TZJ5 1347 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 PASKQ96RG2 1323 aa7.09□□□□□ -1.27
ZNF540-201ENST00000316433 CYP3A7-CYP3A51PA0A087WV96 503 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 SMIM23A6NLE4 172 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 E9PBE3 544 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 GOLGA8TH3BQL2 631 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 AFPP02771 609 aaKnown RBP7.09□□□□□ -1.28
ZNF540-201ENST00000316433 GOLGA8HP0CJ92 632 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 UBL4AP11441 157 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 CYP3A7P24462 503 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 PRCPP42785 496 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 TUBA4AP68366 448 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 ZBTB17Q13105 803 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 PTGDRQ13258 359 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 E2F2Q14209 437 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 KRT71Q3SY84 523 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 ZFYVE27Q5T4F4 411 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 CCDC174Q6PII3 467 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 B3GNT6Q6ZMB0 384 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 GRAMD2AQ8IUY3 354 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 NUP93Q8N1F7 819 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 BBS5Q8N3I7 341 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 FITM2Q8N6M3 262 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 OXER1Q8TDS5 423 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 SLC4A9Q96Q91 983 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 TXLNGYQ9BZA5 131 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 TRIM9Q9C026 710 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 FHDC1Q9C0D6 1143 aaPredicted RBP7.09□□□□□ -1.28
ZNF540-201ENST00000316433 CEP44Q9C0F1 390 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 LACRTQ9GZZ8 138 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 LRMDAQ9H2I8 198 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 EHD2Q9NZN4 543 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 C6orf203Q9P0P8 240 aaPredicted RBP7.09□□□□□ -1.28
ZNF540-201ENST00000316433 CTNND2Q9UQB3 1225 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 PCDHB2Q9Y5E7 798 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 NCANO14594 1321 aa7.09□□□□□ -1.28
ZNF540-201ENST00000316433 IGKV6D-41A0A0C4DH26 115 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 MACROD2A1Z1Q3 448 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ADCY3O60266 1144 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ADAM23O75077 832 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 GJB6O95452 261 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 LDHCP07864 332 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RFX1P22670 979 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CDC25AP30304 524 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 HAND2P61296 217 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 RASSF7Q02833 373 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 SLC15A2Q16348 729 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 ARL13BQ3SXY8 428 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 IFIT1BQ5T764 474 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 LRRC55Q6ZSA7 311 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 FAM47EQ6ZV65 393 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CHST3Q7LGC8 479 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 TMC4Q7Z404 712 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 PHLDB2Q86SQ0 1253 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CEP70Q8NHQ1 597 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 NSUN4Q96CB9 384 aaKnown RBP7.08□□□□□ -1.28
ZNF540-201ENST00000316433 EPB41L1Q9H4G0 881 aa7.08□□□□□ -1.28
ZNF540-201ENST00000316433 CABP5Q9NP86 173 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms