RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 IFT74Q96LB3 600 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 IWS1Q96ST2 819 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 TLR10Q9BXR5 811 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 AP1M1Q9BXS5 423 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 VIPAS39Q9H9C1 493 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 LRRC4CQ9HCJ2 640 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 CD248Q9HCU0 757 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 ANKEF1Q9NU02 776 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 STIM2Q9P246 746 aa8.21□□□□□ -1.1
TRIM55-202ENST00000315962 DDX3XO00571 662 aaKnown RBP eCLIP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SLC16A3O15427 465 aaKnown RBP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 CYP26A1O43174 497 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 B4GALT5O43286 388 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 LYPLA2O95372 231 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 OSBPP22059 807 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 HNRNPH1P31943 449 aaKnown RBP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 TNFSF9P41273 254 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 STAT1P42224 750 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 PPFIA1Q13136 1202 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 CCDC70Q6NSX1 233 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 DPP9Q86TI2 863 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SLC47A2Q86VL8 602 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 EFCAB13Q8IY85 973 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SLC30A5Q8TAD4 765 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 L3MBTL3Q96JM7 780 aaPredicted RBP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 TRIM31Q9BZY9 425 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 APEX2Q9UBZ4 518 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 NAGPAQ9UK23 515 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 MAFBQ9Y5Q3 323 aaPredicted RBP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 PTPRJQ12913 1337 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 ZNF233A6NK53 670 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SLC26A4O43511 780 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 MXI1P50539 228 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 NCKAP1LP55160 1127 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 BIRC3Q13489 604 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SPRED3Q2MJR0 410 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 ZNF394Q53GI3 561 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 NAA35Q5VZE5 725 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SV2AQ7L0J3 742 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 ARMCX2Q7L311 632 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 FASTKD5Q7L8L6 764 aaKnown RBP8.2□□□□□ -1.1
TRIM55-202ENST00000315962 CEP120Q8N960 986 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 LMO3Q8TAP4 145 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 SEPT1Q8WYJ6 367 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 MS4A4AQ96JQ5 239 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 GPR88Q9GZN0 384 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 AIPL1Q9NZN9 384 aa8.2□□□□□ -1.1
TRIM55-202ENST00000315962 A0A087WUV0 522 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 IQCA1LA6NCM1 817 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 TMEM110-MUSTN1A8MSY1 372 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 INO80B-WBP1J3KQ70 363 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 SGPL1O95470 568 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 KRT5P13647 590 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 MUTP22033 750 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 TMOD1P28289 359 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 ACTN3Q08043 901 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 STRN3Q13033 797 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 IFT88Q13099 833 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 CEP85LQ5SZL2 805 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 CST9Q5W186 159 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 LLGL2Q6P1M3 1020 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 INTS8Q75QN2 995 aaKnown RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 THNSL1Q8IYQ7 743 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 EHBP1Q8NDI1 1231 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 GPRC5AQ8NFJ5 357 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 TRIM58Q8NG06 486 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 LNX1Q8TBB1 728 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 PARD3BQ8TEW8 1205 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 ZC3H15Q8WU90 426 aaKnown RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 ZNF516Q92618 1163 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 KIFAP3Q92845 792 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 GPR20Q99678 358 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 JPH2Q9BR39 696 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 INO80BQ9C086 356 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 KCNH4Q9UQ05 1017 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 DOCK1Q14185 1865 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 RLFQ13129 1914 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 TARSL2A2RTX5 802 aaKnown RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 E7EVH7 732 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 VTNP04004 478 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 FGFR4P22455 802 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 COPB2P35606 906 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 SOX5P35711 763 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 PAFAH1B1P43034 410 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 CAPSQ13938 189 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 CFAP58Q5T655 872 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 LDLRAD1Q5T700 205 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 XRRA1Q6P2D8 792 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 METTL7BQ6UX53 244 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 MAP4K3Q8IVH8 894 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 AFG1LQ8WV93 481 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 CASKIN2Q8WXE0 1202 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 BTBD6Q96KE9 485 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 NOX5Q96PH1 765 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 ALS2CR12Q96Q35 445 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 THAP2Q9H0W7 228 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 GBA2Q9HCG7 927 aaPredicted RBP8.19□□□□□ -1.1
TRIM55-202ENST00000315962 PDLIM7Q9NR12 457 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 IVNS1ABPQ9Y6Y0 642 aa8.19□□□□□ -1.1
TRIM55-202ENST00000315962 PHIPQ8WWQ0 1821 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms