RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 NOC4LQ9BVI4 516 aaKnown RBP7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 ADAMTS10Q9H324 1103 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 CUEDC2Q9H467 287 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 MAGEF1Q9HAY2 307 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 TBX21Q9UL17 535 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 CTNND2Q9UQB3 1225 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 PCDHA2Q9Y5H9 948 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 TRPV2Q9Y5S1 764 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 LOXHD1Q8IVV2 1947 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 NRCAMQ92823 1304 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 CUL9Q8IWT3 2517 aa7.16□□□□□ -1.26
DEPDC4-201ENST00000299185 EVPLQ92817 2033 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 SMIM35A0A1B0GVV1 85 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 A0A1W2PRU2 124 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 TRIM49BA6NDI0 452 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 RRN3P2A6NIE6 340 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 GCNT3O95395 438 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 CHRNA1P02708 482 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 IQCF3P0C7M6 154 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 PLS3P13797 630 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 CD52P31358 61 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 HOXD13P35453 343 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 ZNF131P52739 623 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 PMS1P54277 932 aaKnown RBP7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 STX17P56962 302 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 MBTD1Q05BQ5 628 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 EHHADHQ08426 723 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 GPNMBQ14956 572 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 ZSCAN23Q3MJ62 389 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 HERC4Q5GLZ8 1057 aaPredicted RBP7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 ODR4Q5SWX8 454 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 KLHL10Q6JEL2 608 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 SLC39A4Q6P5W5 647 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 FAM228AQ86W67 206 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 MCPH1Q8NEM0 835 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 DEPTORQ8TB45 409 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 PSPC1Q8WXF1 523 aaKnown RBP7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 LINC01599Q8WXQ3 324 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 TIGD1Q96MW7 591 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 CCDC113Q9H0I3 377 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 AGO3Q9H9G7 860 aaKnown RBP7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 PARVGQ9HBI0 331 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 TIMMDC1Q9NPL8 285 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 USP25Q9UHP3 1055 aa7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 NOC2LQ9Y3T9 749 aaKnown RBP7.15□□□□□ -1.26
DEPDC4-201ENST00000299185 DENND3A2RUS2 1198 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 C1QTNF9BB2RNN3 333 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 INO80B-WBP1J3KQ70 363 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 GNB5O14775 395 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MAGEB2O15479 319 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MGEA5O60502 916 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 NBNO60934 754 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 GPR32O75388 356 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 PRKCBP05771 671 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 CLTBP09497 229 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 ACRP10323 421 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MAPTP10636 758 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 CKBP12277 381 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 XRCC6P12956 609 aaKnown RBP eCLIP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 EPHB4P54760 987 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 NCKAP1LP55160 1127 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 TYRO3Q06418 890 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 PTK7Q13308 1070 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 DMP1Q13316 513 aaPredicted RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MORC3Q14149 939 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 LPIN1Q14693 890 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 SEZ6Q53EL9 994 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 ZBTB41Q5SVQ8 909 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 L1TD1Q5T7N2 865 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 NT5DC1Q5TFE4 455 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 IER5Q5VY09 327 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 CDCA2Q69YH5 1023 aaPredicted RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 C1orf229Q6ZS94 237 aaPredicted RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 RBM43Q6ZSC3 357 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 LRRC8DQ7L1W4 858 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 DEFB128Q7Z7B8 93 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 KRTAP1-3Q8IUG1 177 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 FAM178BQ8IXR5 827 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 CCDC65Q8IXS2 484 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 TMEM161BQ8NDZ6 487 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 VWCEQ96DN2 955 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 ZBTB45Q96K62 511 aaPredicted RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 DRC1Q96MC2 740 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MED15Q96RN5 788 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 PYM1Q9BRP8 204 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 TARS2Q9BW92 718 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 INO80BQ9C086 356 aaPredicted RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 GRIP2Q9C0E4 1043 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 HAPLN2Q9GZV7 340 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 DNAJC25Q9H1X3 360 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 HIPK3Q9H422 1215 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MRPL44Q9H9J2 332 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 IFT122Q9HBG6 1241 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 KMT5AQ9NQR1 393 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 RNF19AQ9NV58 838 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 NOP53Q9NZM5 478 aaKnown RBP7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 ARHGAP28Q9P2N2 729 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 ODF2LQ9ULJ1 636 aa7.14□□□□□ -1.27
DEPDC4-201ENST00000299185 MYH11P35749 1972 aa7.13□□□□□ -1.27
DEPDC4-201ENST00000299185 PHLPP2Q6ZVD8 1323 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms