RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 LNX1Q8TBB1 728 aaPredicted RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 RBM17Q96I25 401 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 MTA3Q9BTC8 594 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 CRNKL1Q9BZJ0 848 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 TRABDQ9H4I3 376 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 SAP30BPQ9UHR5 308 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 DNAJC12Q9UKB3 198 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 TMCC1O94876 653 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 CETPP11597 493 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 LMNB1P20700 586 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 MAGEA8P43361 318 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 EIF6P56537 245 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 WDR4P57081 412 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 DSG1Q02413 1049 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 PABPC4Q13310 644 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 PDIA5Q14554 519 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 C1QTNF12Q5T7M4 302 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 C1orf146Q5VVC0 180 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 NLRP10Q86W26 655 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 KBTBD2Q8IY47 623 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 SEC14L1Q92503 715 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 MAML1Q92585 1016 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 FAM136AQ96C01 138 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 PIGSQ96S52 555 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 MIPEPQ99797 713 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 MXD3Q9BW11 206 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 FAM192AQ9GZU8 254 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 DHX36Q9H2U1 1008 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 SMYD3Q9H7B4 428 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 SYNCQ9H7C4 482 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 ARL8BQ9NVJ2 186 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 BARHL2Q9NY43 387 aa10.85□□□□□ -0.67
CLDN1-201ENST00000295522 TDRKHQ9Y2W6 561 aaKnown RBP10.85□□□□□ -0.67
CLDN1-201ENST00000295522 DNAJC6O75061 913 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 T-ENOLP0DO92 83 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 EEF2P13639 858 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 AMPD1P23109 780 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 CYP2J2P51589 502 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 MFSD4BQ5TF39 518 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 TRMT1LQ7Z2T5 733 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 SATL1Q86VE3 508 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 RBM12BQ8IXT5 1001 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 NME8Q8N427 588 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 SH3TC2Q8TF17 1288 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 CCDC124Q96CT7 223 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 CLPTM1LQ96KA5 538 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 CEP63Q96MT8 703 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 TIPINQ9BVW5 301 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 YIPF2Q9BWQ6 316 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 ASCC2Q9H1I8 757 aaPredicted RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 ANGPTL2Q9UKU9 493 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 PHF24Q9UPV7 400 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 MEGF6O75095 1541 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 NID2Q14112 1375 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 ABCB11O95342 1321 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 FRMPD2Q68DX3 1309 aaPredicted RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 CYTH3O43739 400 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 PDE8AO60658 829 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 TTC4O95801 387 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 FTLP02792 175 aaPredicted RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 ENO1P06733 434 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 TRIM49P0CI25 452 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 TRIM49CP0CI26 452 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 RPA3P35244 121 aaPredicted RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 PSMC4P43686 418 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 MPP3Q13368 585 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 UBE2SQ16763 222 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 LVRNQ6Q4G3 990 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 PTF1AQ7RTS3 328 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 VGLL2Q8N8G2 317 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 ENDOVQ8N8Q3 282 aaKnown RBP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.84□□□□□ -0.67
CLDN1-201ENST00000295522 PIP4K2CQ8TBX8 421 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 SCFD1Q8WVM8 642 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 THTPAQ9BU02 230 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 IKZF4Q9H2S9 585 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 STXBP5LQ9Y2K9 1186 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 MROH5Q6ZUA9 1318 aa10.84□□□□□ -0.67
CLDN1-201ENST00000295522 MAGEB3O15480 346 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 CYP1A1P04798 512 aaPredicted RBP10.83□□□□□ -0.67
CLDN1-201ENST00000295522 PLA2G4BP0C869 781 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 PLS3P13797 630 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 CASP5P51878 434 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 YARSP54577 528 aaKnown RBP10.83□□□□□ -0.67
CLDN1-201ENST00000295522 SAYSD1Q9NPB0 183 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 PAIP2BQ9ULR5 123 aaKnown RBP10.83□□□□□ -0.67
CLDN1-201ENST00000295522 PCDHA12Q9UN75 941 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 RGPD2P0DJD1 1756 aa10.83□□□□□ -0.67
CLDN1-201ENST00000295522 ATRNO75882 1429 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 B2RBV5 119 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 GAS8O95995 478 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 VAV1P15498 845 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 PTGIRP43119 386 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 ECM1Q16610 540 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 GRAMD1BQ3KR37 738 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 SPDYCQ5MJ68 293 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 MFSD5Q6N075 450 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 RGS9BPQ6ZS82 235 aa10.83□□□□□ -0.68
CLDN1-201ENST00000295522 MARK2Q7KZI7 788 aaKnown RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms