RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PCSK9Q8NBP7 692 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 PPP1R13LQ8WUF5 828 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 PPP1R13BQ96KQ4 1090 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 FNBP1Q96RU3 617 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 POP1Q99575 1024 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 TRMT1Q9NXH9 659 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 APEX2Q9UBZ4 518 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 GTF2IRD1Q9UHL9 959 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 ADGRG1Q9Y653 693 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 EPN1Q9Y6I3 576 aaPredicted RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 HTTP42858 3142 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 CCDC175P0C221 793 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 MCF2P10911 925 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 ZNF200P98182 395 aaPredicted RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 MAP2K1Q02750 393 aaPredicted RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 KCNA10Q16322 511 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 KIZQ2M2Z5 673 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 ZNF568Q3ZCX4 644 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 EEF1DP3Q658K8 133 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 IQCEQ6IPM2 695 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 SESTD1Q86VW0 696 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 DNAJB3Q8WWF6 145 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 PPP1R16BQ96T49 567 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 STK33Q9BYT3 514 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 CDT1Q9H211 546 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 NHEJ1Q9H9Q4 299 aaPredicted RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 PDE11AQ9HCR9 933 aa15.29■□□□□ 0.04
SS18-201ENST00000269137 TOPORSQ9NS56 1045 aaPredicted RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 CPSF3Q9UKF6 684 aaKnown RBP15.29■□□□□ 0.04
SS18-201ENST00000269137 A0A1B0GUA9 196 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 GOLGA6L9A6NEM1 432 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 TSPAN1O60635 241 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 CSDE1O75534 798 aaKnown RBP15.28■□□□□ 0.04
SS18-201ENST00000269137 NDUFA10O95299 355 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 ASGR1P07306 291 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 HARSP12081 509 aaKnown RBP15.28■□□□□ 0.04
SS18-201ENST00000269137 ARF4P18085 180 aaPredicted RBP15.28■□□□□ 0.04
SS18-201ENST00000269137 SURF1Q15526 300 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 KYAT1Q16773 422 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 TMEM132AQ24JP5 1023 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 HGSNATQ68CP4 663 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 FBXL13Q8NEE6 735 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 ZNF516Q92618 1163 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 VTI1AQ96AJ9 217 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 SPAG5Q96R06 1193 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 CGRRF1Q99675 332 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 PDZD7Q9H5P4 517 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 ARHGAP20Q9P2F6 1191 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 CENPFP49454 3210 aa15.28■□□□□ 0.04
SS18-201ENST00000269137 SSU72P8A0A1W2PR75 194 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 CABYRO75952 493 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 ERLIN2O94905 339 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 C4BPAP04003 597 aaKnown RBP15.27■□□□□ 0.04
SS18-201ENST00000269137 INHAP05111 366 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 SERPING1P05155 500 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 DARSP14868 501 aaKnown RBP15.27■□□□□ 0.04
SS18-201ENST00000269137 GRK4P32298 578 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 CYLC1P35663 651 aaPredicted RBP15.27■□□□□ 0.04
SS18-201ENST00000269137 AP3M2P53677 418 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 WNT7BP56706 349 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 MAPK8IP2Q13387 824 aaPredicted RBP15.27■□□□□ 0.04
SS18-201ENST00000269137 ZACNQ401N2 412 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 SLC9C1Q4G0N8 1177 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.27■□□□□ 0.04
SS18-201ENST00000269137 NYAP1Q6ZVC0 841 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 RNF180Q86T96 592 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 FMNL3Q8IVF7 1028 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 REXO1L1PQ8IX06 675 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 DESI2Q9BSY9 194 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 DNAJC12Q9UKB3 198 aa15.27■□□□□ 0.04
SS18-201ENST00000269137 RPLP2P05387 115 aaKnown RBP15.27■□□□□ 0.03
SS18-201ENST00000269137 TNNI1P19237 187 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 EIF4BP23588 611 aaKnown RBP15.27■□□□□ 0.03
SS18-201ENST00000269137 TNFSF9P41273 254 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 TMEM62Q0P6H9 643 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 RAPGEF1Q13905 1077 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 PHLDB3Q6NSJ2 640 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 GJB7Q6PEY0 223 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 TAS1R2Q8TE23 839 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 SEMA4DQ92854 862 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 CCDC42Q96M95 316 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 CDHR5Q9HBB8 845 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 HMX1Q9NP08 348 aaPredicted RBP15.27■□□□□ 0.03
SS18-201ENST00000269137 RAB20Q9NX57 234 aa15.27■□□□□ 0.03
SS18-201ENST00000269137 AJAP1Q9UKB5 411 aaPredicted RBP15.27■□□□□ 0.03
SS18-201ENST00000269137 EIF3CLB5ME19 914 aaKnown RBP15.26■□□□□ 0.03
SS18-201ENST00000269137 ZC3H11AO75152 810 aaKnown RBP eCLIP15.26■□□□□ 0.03
SS18-201ENST00000269137 CLTAP09496 248 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 PRKCIP41743 596 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 STAT1P42224 750 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 CRYBB1P53674 252 aaPredicted RBP15.26■□□□□ 0.03
SS18-201ENST00000269137 NCBP1Q09161 790 aaKnown RBP15.26■□□□□ 0.03
SS18-201ENST00000269137 ASIC2Q16515 512 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 SEZ6Q53EL9 994 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 IRF2BP2Q7Z5L9 587 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 RPAINQ86UA6 219 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 WDR49Q8IV35 697 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 EIF3CQ99613 913 aaKnown RBP15.26■□□□□ 0.03
SS18-201ENST00000269137 OSMRQ99650 979 aa15.26■□□□□ 0.03
SS18-201ENST00000269137 BEGAINQ9BUH8 593 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms