RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TRMT10CQ7L0Y3 403 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SYT2Q8N9I0 419 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RBM46Q8TBY0 533 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 EGFL8Q99944 293 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 EML4Q9HC35 981 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RRP15Q9Y3B9 282 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 IQGAP1P46940 1657 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 UBA6A0AVT1 1052 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SREBF2Q12772 1141 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 HHIPL2Q6UWX4 724 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 GSPT2Q8IYD1 628 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 EFHBQ8N7U6 833 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RMDN2Q96LZ7 410 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ZFP69BQ9UJL9 534 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CEP170BQ9Y4F5 1589 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CD163L1Q9NR16 1453 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 FER1L4A9Z1Z3 1794 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 STXBP3O00186 592 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 CYP26A1O43174 497 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 IL18RAPO95256 599 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 NOP14P78316 857 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 HSP90AA5PQ58FG0 334 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 RAB42Q8N4Z0 105 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 KLHL29Q96CT2 875 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 THOC1Q96FV9 657 aaKnown RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ZNF512BQ96KM6 892 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-201ENST00000254630 SLC7A5P2Q9GIP4 190 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 KIF17Q9P2E2 1029 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 PCDHB8Q9UN66 801 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 PCDHB7Q9Y5E2 793 aa9.23□□□□□ -0.93
PTCD3-201ENST00000254630 ZC3H4Q9UPT8 1303 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 DNAJC6O75061 913 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 DNAJC8O75937 253 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PDIA5Q14554 519 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 KCNB1Q14721 858 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 RABL6Q3YEC7 729 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 GUF1Q8N442 669 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 ULK4Q96C45 1275 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 ANO9A1A5B4 782 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CCDC151A5D8V7 595 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CFAP69A5D8W1 941 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PSMD3O43242 534 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 GRIN3BO60391 1043 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PYGBP11216 843 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 EEF1B2P24534 225 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SLC1A1P43005 524 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 LBRQ14739 615 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SKIV2LQ15477 1246 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CEP55Q53EZ4 464 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SH3KBP1Q96B97 665 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PITPNM3Q9BZ71 974 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SIK2Q9H0K1 926 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CPS1P31327 1500 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PDXKO00764 312 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 LMNAP02545 664 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CTSHP09668 335 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CPT1AP50416 773 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 MDM2Q00987 491 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 POU5F1BQ06416 359 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SV2CQ496J9 727 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 ZBED8Q8IZ13 594 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 RGL1Q9NZL6 768 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SPATA31A5Q5VU36 1347 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SPATA31A7Q8IWB4 1347 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CNTNAP4Q9C0A0 1308 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 FAM187AA6NFU0 413 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 TRAPPC3O43617 180 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CETPP11597 493 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 KRT17Q04695 432 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 GTF2H3Q13889 308 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 BAATQ14032 418 aaPredicted RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SF3B3Q15393 1217 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PTPRUQ92729 1446 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 KLHL11Q9NVR0 708 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 GGA3Q9NZ52 723 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 PNPLA6Q8IY17 1366 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 MYBP10242 640 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 MCF2P10911 925 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 ITGA4P13612 1032 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 CDH6P55285 790 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 RBP5P82980 135 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 SYTL3Q4VX76 610 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 IER5Q5VY09 327 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 RCOR2Q8IZ40 523 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 REEP2Q9BRK0 252 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 MRPL40Q9NQ50 206 aaKnown RBP9.22□□□□□ -0.93
PTCD3-201ENST00000254630 NYAP2Q9P242 653 aa9.22□□□□□ -0.93
PTCD3-201ENST00000254630 FOXN1O15353 648 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 SPAG7O75391 227 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 MYO1DO94832 1006 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 IFNA8P32881 189 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 EIF3EP60228 445 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 ESRRGP62508 458 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 PRAMEP78395 509 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 EFTUD2Q15029 972 aaKnown RBP eCLIP9.21□□□□□ -0.934e-7■■■■■ 28.2
PTCD3-201ENST00000254630 NUDT18Q6ZVK8 323 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 WDR75Q8IWA0 830 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 PIP4K2CQ8TBX8 421 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 EPAS1Q99814 870 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 PPARGC1AQ9UBK2 798 aaKnown RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms