RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	MRPL23	Q12487	163 aa	Predicted RBP	2.29	□□□□□ -2.04
RUB1	YDR139C	HIS3	P06633	220 aa		2.28	□□□□□ -2.04
RUB1	YDR139C	CAM1	P29547	415 aa	Known RBP	2.28	□□□□□ -2.04
RUB1	YDR139C	PEX18	P38855	283 aa		2.28	□□□□□ -2.04
RUB1	YDR139C	PCL7	P40186	285 aa		2.28	□□□□□ -2.04
RUB1	YDR139C	YEL009C-A	A0A023PZF2	135 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	RPS3	P05750	240 aa	Known RBP	2.27	□□□□□ -2.05
RUB1	YDR139C	RPC40	P07703	335 aa	Known RBP	2.27	□□□□□ -2.05
RUB1	YDR139C	YSR3	P23501	404 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	RRT12	P25381	491 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	RRF1	P38771	230 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	MRX5	P47007	382 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	OST3	P48439	350 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	PEX31	P53203	462 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	CDD1	Q06549	142 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	FMP16	Q12497	93 aa		2.27	□□□□□ -2.05
RUB1	YDR139C	YAL064W-B	O13512	126 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	TDH1	P00360	332 aa	Known RBP	2.26	□□□□□ -2.05
RUB1	YDR139C	PEX3	P28795	441 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	YKL070W	P36087	169 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	YER188W	P40103	239 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	MND1	P53102	219 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	FMP41	P53889	259 aa	Known RBP	2.26	□□□□□ -2.05
RUB1	YDR139C	ERV25	P54837	211 aa	Known RBP	2.26	□□□□□ -2.05
RUB1	YDR139C	TRM44	Q02648	567 aa	Known RBP	2.26	□□□□□ -2.05
RUB1	YDR139C	VBA1	Q04301	562 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	SFH1	Q06168	426 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	SEC10	Q06245	871 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	ISD11	Q6Q560	94 aa		2.26	□□□□□ -2.05
RUB1	YDR139C	BMH1	P29311	267 aa	Known RBP	2.25	□□□□□ -2.05
RUB1	YDR139C	EBP2	P36049	427 aa	Known RBP	2.25	□□□□□ -2.05
RUB1	YDR139C	YPL039W	Q03080	316 aa		2.25	□□□□□ -2.05
RUB1	YDR139C	SDC1	Q03323	175 aa		2.25	□□□□□ -2.05
RUB1	YDR139C	YOS9	Q99220	542 aa		2.25	□□□□□ -2.05
RUB1	YDR139C	HMT1	P38074	348 aa		2.24	□□□□□ -2.05
RUB1	YDR139C	FMP33	P46998	180 aa		2.24	□□□□□ -2.05
RUB1	YDR139C	YJR141W	P47172	347 aa	Predicted RBP	2.24	□□□□□ -2.05
RUB1	YDR139C	RGM1	Q00453	211 aa		2.24	□□□□□ -2.05
RUB1	YDR139C	FCF1	Q05498	189 aa	Predicted RBP	2.24	□□□□□ -2.05
RUB1	YDR139C	LOA1	Q06508	300 aa		2.24	□□□□□ -2.05
RUB1	YDR139C	PER33	Q12144	273 aa		2.24	□□□□□ -2.05
RUB1	YDR139C	CSG2	P35206	410 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	ATG12	P38316	186 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	ARN2	P38724	620 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	MED6	P38782	295 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	SHC1	P39000	512 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	PIR5	P46999	287 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	TIM21	P53220	239 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	LSB1	P53281	241 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	SSU72	P53538	206 aa	Predicted RBP	2.23	□□□□□ -2.05
RUB1	YDR139C	SPP2	Q02521	185 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	YOL019W	Q08157	551 aa		2.23	□□□□□ -2.05
RUB1	YDR139C	SSA3	P09435	649 aa	Known RBP	2.22	□□□□□ -2.05
RUB1	YDR139C	POF1	P25576	258 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	COY1	P34237	679 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	SER33	P40510	469 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	GMC2	Q06201	188 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	AGC1	Q12482	902 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	YBL112C	Q3E7Y4	105 aa		2.22	□□□□□ -2.05
RUB1	YDR139C	RPL4A	P10664	362 aa	Known RBP	2.21	□□□□□ -2.06
RUB1	YDR139C	SNF6	P18888	332 aa		2.21	□□□□□ -2.06
RUB1	YDR139C	HSM3	P38348	480 aa		2.21	□□□□□ -2.06
RUB1	YDR139C	NPT1	P39683	429 aa	Known RBP	2.21	□□□□□ -2.06
RUB1	YDR139C	RPL4B	P49626	362 aa	Known RBP	2.21	□□□□□ -2.06
RUB1	YDR139C	YMR166C	Q03829	368 aa		2.21	□□□□□ -2.06
RUB1	YDR139C	AI5_BETA	Q9ZZX0	354 aa		2.21	□□□□□ -2.06
RUB1	YDR139C	MET16	P18408	261 aa	Predicted RBP	2.2	□□□□□ -2.06
RUB1	YDR139C	TOM40	P23644	387 aa	Known RBP	2.2	□□□□□ -2.06
RUB1	YDR139C	SPT8	P38915	602 aa		2.2	□□□□□ -2.06
RUB1	YDR139C	TAD2	P47058	250 aa		2.2	□□□□□ -2.06
RUB1	YDR139C	MNT4	P53745	580 aa		2.2	□□□□□ -2.06
RUB1	YDR139C	CDC14	Q00684	551 aa		2.2	□□□□□ -2.06
RUB1	YDR139C	SMT3	Q12306	101 aa	Known RBP	2.2	□□□□□ -2.06
RUB1	YDR139C	SSK22	P25390	1331 aa	Predicted RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	RPP0	P05317	312 aa	Known RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	RPL26A	P05743	127 aa	Known RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	CLB6	P32943	380 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	SFC1	P33303	322 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	NIF3	P53081	288 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	RPL26B	P53221	127 aa	Known RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	SLX9	P53251	210 aa	Predicted RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	MYO5	Q04439	1219 aa	Known RBP	2.19	□□□□□ -2.06
RUB1	YDR139C	CTS2	Q06350	511 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	ARV1	Q06541	321 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	CTR3	Q06686	241 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	STH1	P32597	1359 aa		2.19	□□□□□ -2.06
RUB1	YDR139C	RAD10	P06838	210 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	COS2	P0CX12	379 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	COS3	P0CX13	379 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	DPM1	P14020	267 aa	Known RBP	2.18	□□□□□ -2.06
RUB1	YDR139C	DPB2	P24482	689 aa	Predicted RBP	2.18	□□□□□ -2.06
RUB1	YDR139C	TEM1	P38987	245 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	AGX1	P43567	385 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	MNN5	P46982	586 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	EMC2	P47133	292 aa	Known RBP	2.18	□□□□□ -2.06
RUB1	YDR139C	DSK2	P48510	373 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	NBP35	P52920	328 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	KAP114	P53067	1004 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	SWS2	P53937	143 aa		2.18	□□□□□ -2.06
RUB1	YDR139C	ATC1	Q04005	294 aa		2.18	□□□□□ -2.06

Retrieved 100 of 5,963 RNA–protein pairs in 682.6 ms