RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 HACE1Q8IYU2 909 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 FBXL16Q8N461 479 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 HASPINQ8TF76 798 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 FAM20AQ96MK3 541 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 FOXQ1Q9C009 403 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 CSRNP2Q9H175 543 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 RXFP1Q9HBX9 757 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 CACNG4Q9UBN1 327 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 PARP2Q9UGN5 583 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 NUMBLQ9Y6R0 609 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 DOCK8Q8NF50 2099 aa16.71■□□□□ 0.27
SYNE2-228ENST00000639659 WDR87Q6ZQQ6 2873 aa16.71■□□□□ 0.26
SYNE2-228ENST00000639659 ASAP2O43150 1006 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 DSC1Q08554 894 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 EPHA7Q15375 998 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 USP41Q3LFD5 358 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 GALNT17Q6IS24 598 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 DCLRE1AQ6PJP8 1040 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 PRSS55Q6UWB4 352 aaPredicted RBP16.7■□□□□ 0.26
SYNE2-228ENST00000639659 C4orf19Q8IY42 314 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 GPR62Q9BZJ7 368 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 NT5C3AQ9H0P0 336 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 KCNMB3Q9NPA1 279 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 POLIQ9UNA4 740 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 SIT1Q9Y3P8 196 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 PPME1Q9Y570 386 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 CYP46A1Q9Y6A2 500 aa16.7■□□□□ 0.26
SYNE2-228ENST00000639659 B4GALT5O43286 388 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 TADA2AO75478 443 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 REC8O95072 547 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 LAMP2P13473 410 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 GCFC2P16383 781 aaKnown RBP16.69■□□□□ 0.26
SYNE2-228ENST00000639659 FSHRP23945 695 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 AXLP30530 894 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 PTENP60484 403 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 ZC3H14Q6PJT7 736 aaKnown RBP16.69■□□□□ 0.26
SYNE2-228ENST00000639659 CYP26C1Q6V0L0 522 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 CEP57Q86XR8 500 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 RNF168Q8IYW5 571 aaPredicted RBP16.69■□□□□ 0.26
SYNE2-228ENST00000639659 ASAP3Q8TDY4 903 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 RMDN1Q96DB5 314 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 CCDC51Q96ER9 411 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 PRKD2Q9BZL6 878 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 PLEKHA4Q9H4M7 779 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 ZSWIM4Q9H7M6 989 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 XPNPEP1Q9NQW7 623 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.69■□□□□ 0.26
SYNE2-228ENST00000639659 GJB4Q9NTQ9 266 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 ZDHHC7Q9NXF8 308 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 ADAM28Q9UKQ2 775 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 DCHS1Q96JQ0 3298 aa16.69■□□□□ 0.26
SYNE2-228ENST00000639659 MTCL1Q9Y4B5 1905 aaKnown RBP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 LRRN2O75325 713 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 BAG4O95429 457 aaKnown RBP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 ARF4P18085 180 aaPredicted RBP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 EVCP57679 992 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 NTHL1P78549 312 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 MBTD1Q05BQ5 628 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 HTR4Q13639 388 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 CAPSQ13938 189 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 MXD4Q14582 209 aaPredicted RBP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 TMEM132AQ24JP5 1023 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 LIN9Q5TKA1 542 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 DGLUCYQ7Z3D6 616 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 GRASPQ7Z6J2 395 aaPredicted RBP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 OXER1Q8TDS5 423 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 HAS1Q92839 578 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 NXPE3Q969Y0 559 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.68■□□□□ 0.26
SYNE2-228ENST00000639659 GIT1Q9Y2X7 761 aa16.68■□□□□ 0.26
SYNE2-228ENST00000639659 EP300Q09472 2414 aaPredicted RBP16.67■□□□□ 0.26
SYNE2-228ENST00000639659 MYH15Q9Y2K3 1946 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 CASTOR2A6NHX0 329 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 SP9P0CG40 484 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 XBP1P17861 261 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 GRIK3Q13003 919 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 PPP4R3AQ6IN85 833 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 MAEAQ7L5Y9 396 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 DCLK2Q8N568 766 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 HDAC7Q8WUI4 952 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 PHF20Q9BVI0 1012 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 SEMA4AQ9H3S1 761 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 CHST7Q9NS84 486 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 DMXL1Q9Y485 3027 aa16.67■□□□□ 0.26
SYNE2-228ENST00000639659 COL4A3Q01955 1670 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 A0A087WWV3 80 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 MED19A0JLT2 244 aaPredicted RBP16.66■□□□□ 0.26
SYNE2-228ENST00000639659 FAM205CA6NFA0 338 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 POTEMA6NI47 508 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 LRRIQ4A6NIV6 560 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 CCL16O15467 120 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 USO1O60763 962 aaKnown RBP16.66■□□□□ 0.26
SYNE2-228ENST00000639659 ZMYND10O75800 440 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 CREMQ03060 361 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 SNW1Q13573 536 aaKnown RBP16.66■□□□□ 0.26
SYNE2-228ENST00000639659 HSP90AA2PQ14568 343 aaPredicted RBP16.66■□□□□ 0.26
SYNE2-228ENST00000639659 UBXN2BQ14CS0 331 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 RTP2Q5QGT7 225 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 PHLDB3Q6NSJ2 640 aa16.66■□□□□ 0.26
SYNE2-228ENST00000639659 SLC27A1Q6PCB7 646 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms