RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 NOSTRINQ8IVI9 506 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 BLIDQ8IZY5 108 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 ZBTB44Q8NCP5 570 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 PJA1Q8NG27 643 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 NLRP7Q8WX94 980 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 NELL1Q92832 810 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 CNTNAP3BQ96NU0 1288 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 DDX23Q9BUQ8 820 aaKnown RBP8.24□□□□□ -1.09
CIITA-214ENST00000636238 NIFKQ9BYG3 293 aaKnown RBP8.24□□□□□ -1.09
CIITA-214ENST00000636238 BCO2Q9BYV7 579 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 CNTNAP3Q9BZ76 1288 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 SCAND2PQ9GZW5 306 aaPredicted RBP8.24□□□□□ -1.09
CIITA-214ENST00000636238 EPC1Q9H2F5 836 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 FOXP1Q9H334 677 aaPredicted RBP8.24□□□□□ -1.09
CIITA-214ENST00000636238 MAN1C1Q9NR34 630 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 SH3GLB2Q9NR46 395 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 FAM105AQ9NUU6 356 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 NCDNQ9UBB6 729 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 GABBR1Q9UBS5 961 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 RCOR1Q9UKL0 485 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 CFAP45Q9UL16 551 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 R4GN57 208 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 KAT6AQ92794 2004 aa8.24□□□□□ -1.09
CIITA-214ENST00000636238 CCDC195A0A1B0GUA6 201 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 SMCO2A6NFE2 343 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 NT5C1B-RDH14C9J2C7 533 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 NCAM2O15394 837 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 LAMTOR5O43504 91 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 LILRB5O75023 590 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 LRP3O75074 770 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 N4BP1O75113 896 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 NR1I2O75469 434 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 EFEMP2O95967 443 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 CFHP08603 1231 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 LAMP2P13473 410 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 RPS9P46781 194 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 SLC11A1P49279 550 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 HTR4Q13639 388 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 SF3A1Q15459 793 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 TARBP2Q15633 366 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 XKR3Q5GH77 459 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 MTSS1LQ765P7 747 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 RNF168Q8IYW5 571 aaPredicted RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 ATRIPQ8WXE1 791 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 AUTS2Q8WXX7 1259 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 SMG7Q92540 1137 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 TNFRSF25Q93038 417 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 CCDC51Q96ER9 411 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 PGBD1Q96JS3 809 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 FAM193BQ96PV7 902 aaPredicted RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 BRMS1Q9HCU9 246 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 ZSCAN32Q9NX65 697 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 FNIP2Q9P278 1114 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 CDV3Q9UKY7 258 aaKnown RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 PCDHA4Q9UN74 947 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 FAN1Q9Y2M0 1017 aa8.23□□□□□ -1.09
CIITA-214ENST00000636238 FNDC1Q4ZHG4 1894 aaPredicted RBP8.23□□□□□ -1.09
CIITA-214ENST00000636238 KANSL1LA0AUZ9 987 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 DDX39AO00148 427 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 WNT7AO00755 349 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 NARSO43776 548 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 HNRNPA1P09651 372 aaKnown RBP eCLIP8.22□□□□□ -1.09
CIITA-214ENST00000636238 MARCKSP29966 332 aaPredicted RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 GNA11P29992 359 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 HOXA9P31269 272 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 GLUD2P49448 558 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 ATXN1P54253 815 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 UBE2HP62256 183 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 PRKCEQ02156 737 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 DSG1Q02413 1049 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 ZNF174Q15697 407 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 KLHL40Q2TBA0 621 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 JAKMIP3Q5VZ66 844 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 ATL3Q6DD88 541 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 CAVIN1Q6NZI2 390 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 PIK3AP1Q6ZUJ8 805 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 REXO1Q8N1G1 1221 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 LRRC71Q8N4P6 559 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 LINC00301Q8NCQ3 95 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 CCDC148Q8NFR7 591 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 BICD2Q8TD16 824 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 GPR152Q8TDT2 470 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 BCL7CQ8WUZ0 217 aaPredicted RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 DDX1Q92499 740 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 ZNF707Q96C28 371 aaPredicted RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 PPP1R16BQ96T49 567 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 VN1R3Q9BXE9 311 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 PRKD2Q9BZL6 878 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 ZMYND12Q9H0C1 365 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 RSAD1Q9HA92 442 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 C6orf50Q9HD87 102 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 DISC1Q9NRI5 854 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 AGPAT5Q9NUQ2 364 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 CA14Q9ULX7 337 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 PIN4Q9Y237 131 aaKnown RBP8.22□□□□□ -1.09
CIITA-214ENST00000636238 PCDHB6Q9Y5E3 794 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 LOXHD1Q8IVV2 1947 aa8.22□□□□□ -1.09
CIITA-214ENST00000636238 GOLGA6L4A6NEF3 574 aa8.21□□□□□ -1.1
CIITA-214ENST00000636238 M0R2N6 131 aa8.21□□□□□ -1.1
CIITA-214ENST00000636238 SPTLC2O15270 562 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms