RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 COPS2P61201 443 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 SHROOM1Q2M3G4 852 aaPredicted RBP13.45□□□□□ -0.26
LIG1-221ENST00000613670 CCDC62Q6P9F0 684 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 CCDC89Q8N998 374 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.45□□□□□ -0.26
LIG1-221ENST00000613670 CCPG1Q9ULG6 757 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 ASTN1O14525 1302 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PFASO15067 1338 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 GOLGA8RI6L899 631 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 MAPK13O15264 365 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PPFIA2O75334 1257 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 MYBL1P10243 752 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 CD19P15391 556 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 ALDH5A1P51649 535 aaPredicted RBP13.45□□□□□ -0.26
LIG1-221ENST00000613670 NPEPPSP55786 919 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 DDR1Q08345 913 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 RASA3Q14644 834 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 GNPTABQ3T906 1256 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 RFX8Q6ZV50 586 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 TMEM179Q6ZVK1 233 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PRELID2Q8N945 189 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PWWP2AQ96N64 755 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PI4K2AQ9BTU6 479 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 COA1Q9GZY4 146 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 SPATS2LQ9NUQ6 558 aaKnown RBP13.45□□□□□ -0.26
LIG1-221ENST00000613670 DONSONQ9NYP3 566 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 SPATA31A1Q5TZJ5 1347 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 CLGNO14967 610 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 RARAP10276 462 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 SPRED3Q2MJR0 410 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 DUPD1Q68J44 220 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 HAUS6Q7Z4H7 955 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 NUDCD1Q96RS6 583 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 TRIM33Q9UPN9 1127 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 PCDHB4Q9Y5E5 795 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 LRRD1A4D1F6 860 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 RASSF9O75901 435 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 CALCAP01258 141 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 EIF2AK2P19525 551 aaKnown RBP13.45□□□□□ -0.26
LIG1-221ENST00000613670 SPARCL1Q14515 664 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 TRMT10CQ7L0Y3 403 aaKnown RBP13.45□□□□□ -0.26
LIG1-221ENST00000613670 OGFOD1Q8N543 542 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 AGAP11Q8TF27 550 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 IWS1Q96ST2 819 aa13.45□□□□□ -0.26
LIG1-221ENST00000613670 DUOX1Q9NRD9 1551 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 BAG2O95816 211 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 TARSP26639 723 aaKnown RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 DMP1Q13316 513 aaPredicted RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 ITIH4Q14624 930 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 MIGA2Q7L4E1 593 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 SLC47A2Q86VL8 602 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 EIF1ADQ8N9N8 165 aaKnown RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 PGM2Q96G03 612 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 CFAP57Q96MR6 1250 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 TMEM117Q9H0C3 514 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 HSPBP1Q9NZL4 362 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 PNMA3Q9UL41 463 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 MYO5AQ9Y4I1 1855 aaKnown RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 AKAP11Q9UKA4 1901 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 LUC7L3O95232 432 aaKnown RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 MAN1A1P33908 653 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 CEP55Q53EZ4 464 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 ZNF394Q53GI3 561 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 ARHGEF19Q8IW93 802 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 CCT6BQ92526 530 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 RBM15Q96T37 977 aaKnown RBP eCLIP13.44□□□□□ -0.268e-6■□□□□ 8.4
LIG1-221ENST00000613670 KMT5AQ9NQR1 393 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 SEL1LQ9UBV2 794 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 GGA2Q9UJY4 613 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 KRT1P04264 644 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 SHMT1P34896 483 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 BBS9Q3SYG4 887 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 PHLDB3Q6NSJ2 640 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 ZFPM1Q8IX07 1006 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 BBOF1Q8ND07 529 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 KLF6Q99612 283 aaPredicted RBP13.44□□□□□ -0.26
LIG1-221ENST00000613670 ANKFY1Q9P2R3 1169 aa13.44□□□□□ -0.26
LIG1-221ENST00000613670 TCRBV7S2A1N4TA0A589 114 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 TBX3O15119 743 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ASAP2O43150 1006 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 CDH16O75309 829 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 GHRP10912 638 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 LIG4P49917 911 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 DLG4P78352 724 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 AUHQ13825 339 aaKnown RBP13.43□□□□□ -0.26
LIG1-221ENST00000613670 RCN2Q14257 317 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ZNF720Q7Z2F6 126 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 DHX38Q92620 1227 aaKnown RBP13.43□□□□□ -0.26
LIG1-221ENST00000613670 KIFC3Q9BVG8 833 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ADAM22Q9P0K1 906 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 CASZ1Q86V15 1759 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 CREB1P16220 341 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 PIK3CAP42336 1068 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 GPS1Q13098 491 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ANKMY2Q8IV38 441 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ZBED8Q8IZ13 594 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 MIEF2Q96C03 454 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 MKNK1Q9BUB5 465 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 OSBPL1AQ9BXW6 950 aa13.43□□□□□ -0.26
LIG1-221ENST00000613670 ATP6V0A4Q9HBG4 840 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms