RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 IQCB1Q15051 598 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 UBXN11Q5T124 520 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 TWF2Q6IBS0 349 aaKnown RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 LRRC55Q6ZSA7 311 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 ZBTB33Q86T24 672 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 CDR2LQ86X02 465 aaPredicted RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 DHX40Q8IX18 779 aaKnown RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 CSGALNACT2Q8N6G5 542 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 XXYLT1Q8NBI6 393 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 FAM200AQ8TCP9 573 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 FBXL18Q96ME1 805 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 CEP63Q96MT8 703 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 CDT1Q9H211 546 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 TSPYL2Q9H2G4 693 aaPredicted RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 CBX8Q9HC52 389 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 AGO2Q9UKV8 859 aaKnown RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 MKI67P46013 3256 aaKnown RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 OGTO15294 1046 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 EXTL3O43909 919 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 FAM189A1O60320 539 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 MGEA5O60502 916 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 NPTXRO95502 500 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 LDHAP00338 332 aaKnown RBP15.66■□□□□ 0.1
UPF1-211ENST00000600868 CYP2J2P51589 502 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 PPIGQ13427 754 aaKnown RBP eCLIP15.66■□□□□ 0.13e-7■■□□□ 11.5
UPF1-211ENST00000600868 NCAPHQ15003 741 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 KYAT1Q16773 422 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 TPD52L1Q16890 204 aaPredicted RBP15.66■□□□□ 0.1
UPF1-211ENST00000600868 CNKSR3Q6P9H4 555 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 DEFB128Q7Z7B8 93 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 GPD1LQ8N335 351 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 AOPEPQ8N6M6 819 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 TET1Q8NFU7 2136 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 NOC3LQ8WTT2 800 aaKnown RBP15.66■□□□□ 0.1
UPF1-211ENST00000600868 BADQ92934 168 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 ADAM2Q99965 735 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 MKNK1Q9BUB5 465 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 EIF2AQ9BY44 585 aaKnown RBP15.66■□□□□ 0.1
UPF1-211ENST00000600868 PCIF1Q9H4Z3 704 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 KIAA1586Q9HCI6 787 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 IL23AQ9NPF7 189 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 RGS18Q9NS28 235 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 C1orf112Q9NSG2 853 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 NR2E3Q9Y5X4 410 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 LTBP2Q14767 1821 aa15.66■□□□□ 0.1
UPF1-211ENST00000600868 A0A0U1RQF3 1178 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 BECN2A8MW95 431 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 MAPK13O15264 365 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 EXOC3O60645 756 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 ZNF623O75123 536 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 SKIP12755 728 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 RAB27AP51159 221 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 POU5F1Q01860 360 aaKnown RBP15.65■□□□□ 0.1
UPF1-211ENST00000600868 SLC24A5Q71RS6 500 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 FILIP1Q7Z7B0 1213 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 RTN4RL1Q86UN2 441 aaPredicted RBP15.65■□□□□ 0.1
UPF1-211ENST00000600868 LINC01599Q8WXQ3 324 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 SRRTQ9BXP5 876 aaKnown RBP15.65■□□□□ 0.1
UPF1-211ENST00000600868 TRIM6Q9C030 488 aaPredicted RBP15.65■□□□□ 0.1
UPF1-211ENST00000600868 THAP9Q9H5L6 903 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 FAM105AQ9NUU6 356 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 FRMD4BQ9Y2L6 1034 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 NFE2L3Q9Y4A8 694 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 PCDHB2Q9Y5E7 798 aa15.65■□□□□ 0.1
UPF1-211ENST00000600868 RBAK-RBAKDNI3L0D1 243 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 ENPP3O14638 875 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 SLC16A3O15427 465 aaKnown RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 AKAP3O75969 853 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 GNA14O95837 355 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 HARSP12081 509 aaKnown RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 GRM5P41594 1212 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 FAM189BP81408 668 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 FPGSQ05932 587 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 IKBKEQ14164 716 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 TCTN1Q2MV58 587 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 CEP135Q66GS9 1140 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 CRELD2Q6UXH1 353 aaPredicted RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 MRPL10Q7Z7H8 261 aaKnown RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 GAS2L3Q86XJ1 694 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 THNSL1Q8IYQ7 743 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 ZSWIM2Q8NEG5 633 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 SAAL1Q96ER3 474 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 CPSF3Q9UKF6 684 aaKnown RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 ZMYND8Q9ULU4 1186 aaPredicted RBP15.64■□□□□ 0.09
UPF1-211ENST00000600868 IPPQ9Y573 584 aa15.64■□□□□ 0.09
UPF1-211ENST00000600868 ABHD14A-ACY1A0A1B0GW23 586 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 GOLGA8IPA6NC78 632 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 ZNF233A6NK53 670 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 GOLGA8JA6NMD2 632 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 C9IYK1 514 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 EFCAB14O75071 495 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 CLTAP09496 248 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 EPB41P11171 864 aaKnown RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 SYN1P17600 705 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 PSMC2P35998 433 aaKnown RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 CASP4P49662 377 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 ACOT2P49753 483 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 RGS19P49795 217 aa15.63■□□□□ 0.09
UPF1-211ENST00000600868 SNRNP35Q16560 246 aaKnown RBP15.63■□□□□ 0.09
UPF1-211ENST00000600868 LUZP1Q86V48 1076 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms