RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	PRRX2	Q99811	253 aa		13.99	□□□□□ -0.17
UPF1-208	ENST00000600012	MAN1B1	Q9UKM7	699 aa		13.99	□□□□□ -0.17
UPF1-208	ENST00000600012	MYMK	A6NI61	221 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	SMC2	O95347	1197 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	EOMES	O95936	686 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	DARS	P14868	501 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	HOXB8	P17481	243 aa	Predicted RBP	13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	QARS	P47897	775 aa	Known RBP	13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	SIGLEC14	Q08ET2	396 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	TBC1D8B	Q0IIM8	1120 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	STX1A	Q16623	288 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	RNF169	Q8NCN4	708 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	S1PR5	Q9H228	398 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	SPG21	Q9NZD8	308 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012	DNM3	Q9UQ16	869 aa		13.98	□□□□□ -0.17
UPF1-208	ENST00000600012		A0A0U1RQF3	1178 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	HIDE1	A8MVS5	230 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	ZBTB39	O15060	712 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	RPN1	P04843	607 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	MUT	P22033	750 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	PBX3	P40426	434 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	PTPN5	P54829	565 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	SLC12A3	P55017	1021 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	NLRP12	P59046	1061 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	GSE1	Q14687	1217 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	CLLU1OS	Q5K130	101 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	SYCE2	Q6PIF2	218 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	TMC7	Q7Z402	723 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	GPBP1	Q86WP2	473 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	FBXL6	Q8N531	539 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	SPATA20	Q8TB22	786 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	NLRP7	Q8WX94	980 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	RSPH1	Q8WYR4	309 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	CASP10	Q92851	521 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	ZNF668	Q96K58	619 aa	Predicted RBP	13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	C7orf25	Q9BPX7	421 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	MRPL9	Q9BYD2	267 aa	Known RBP	13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	TRIM9	Q9C026	710 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	BHMT2	Q9H2M3	363 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	ZSWIM4	Q9H7M6	989 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	MYO10	Q9HD67	2058 aa		13.97	□□□□□ -0.17
UPF1-208	ENST00000600012	CACNA1H	O95180	2353 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	TMEM150B	A6NC51	233 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	KLRC4	O43908	158 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	CYP11B2	P19099	503 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	PSMC5	P62195	406 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	ASIC1	P78348	528 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	CDC42EP1	Q00587	391 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	AMPD3	Q01432	767 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	CACNB1	Q02641	598 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	SMC1A	Q14683	1233 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	BMS1	Q14692	1282 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	TARBP2	Q15633	366 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	PTPN21	Q16825	1174 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	DPCR1	Q3MIW9	517 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	ANO6	Q4KMQ2	910 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	NT5DC1	Q5TFE4	455 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	LLGL2	Q6P1M3	1020 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	DYM	Q7RTS9	669 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	ZNF598	Q86UK7	904 aa	Known RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	SLC39A11	Q8N1S5	342 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	SYT2	Q8N9I0	419 aa	Predicted RBP	13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	PRSS33	Q8NF86	280 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	NACC1	Q96RE7	527 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	DNAJC25	Q9H1X3	360 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	WDFY4	Q6ZS81	3184 aa		13.96	□□□□□ -0.17
UPF1-208	ENST00000600012	CARNS1	A5YM72	827 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	LYPLA2	O95372	231 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	MYL1	P05976	194 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	BMP6	P22004	513 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	ALDH7A1	P49419	539 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	RAD51AP2	Q09MP3	1159 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	MORC3	Q14149	939 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	KMT5B	Q4FZB7	885 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	XKR3	Q5GH77	459 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	IER5L	Q5T953	404 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	C4orf19	Q8IY42	314 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	KCTD17	Q8N5Z5	321 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	MRPL43	Q8N983	215 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	HELQ	Q8TDG4	1101 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	DDX12P	Q92771	950 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	ASIC4	Q96FT7	647 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	RUSC1	Q9BVN2	902 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	APOL5	Q9BWW9	433 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	NIFK	Q9BYG3	293 aa	Known RBP	13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	RBSN	Q9H1K0	784 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	CHST12	Q9NRB3	414 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	ANO10	Q9NW15	660 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	NR2E1	Q9Y466	385 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	HCFC2	Q9Y5Z7	792 aa		13.95	□□□□□ -0.18
UPF1-208	ENST00000600012	ARHGEF35	A5YM69	484 aa		13.94	□□□□□ -0.18
UPF1-208	ENST00000600012	C2orf71	A6NGG8	1288 aa		13.94	□□□□□ -0.18
UPF1-208	ENST00000600012	KRT18	P05783	430 aa	Known RBP	13.94	□□□□□ -0.18
UPF1-208	ENST00000600012	FGFR4	P22455	802 aa		13.94	□□□□□ -0.18
UPF1-208	ENST00000600012	SFPQ	P23246	707 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
UPF1-208	ENST00000600012	YWHAB	P31946	246 aa	Known RBP	13.94	□□□□□ -0.18

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