RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 POMCP01189 267 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 ITGB1P05556 798 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 PPM1AP35813 382 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 MLH1P40692 756 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 BCAR1P56945 870 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 GTF2BQ00403 316 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 PLCB3Q01970 1234 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 KRT17Q04695 432 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 UBE3AQ05086 875 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 ZNF568Q3ZCX4 644 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 HERC4Q5GLZ8 1057 aaPredicted RBP16.48■□□□□ 0.23
UPF1-202ENST00000594243 MPZL3Q6UWV2 235 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 ZNF720Q7Z2F6 126 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 CCDC65Q8IXS2 484 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 CEP57L1Q8IYX8 460 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 SPPL3Q8TCT6 385 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 PPM1EQ8WY54 764 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 STAMQ92783 540 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 BICD1Q96G01 975 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 GAD1Q99259 594 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 NRDE2Q9H7Z3 1164 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 MRPL44Q9H9J2 332 aaKnown RBP16.48■□□□□ 0.23
UPF1-202ENST00000594243 PANK4Q9NVE7 773 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 SNTG2Q9NY99 539 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 SPG21Q9NZD8 308 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 HCSTQ9UBK5 93 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 USP25Q9UHP3 1055 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 PUF60Q9UHX1 559 aaKnown RBP16.48■□□□□ 0.23
UPF1-202ENST00000594243 UNC80Q8N2C7 3258 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 ZMYM2Q9UBW7 1377 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 A0A1B0GVL5 298 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 A0A1W2PQ27 194 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 A0A1W2PQ64 194 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 A0A1W2PQD8 194 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 FRMD3A2A2Y4 597 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 GRM6O15303 877 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 ZC3H11AO75152 810 aaKnown RBP eCLIP16.47■□□□□ 0.23
UPF1-202ENST00000594243 ALDH2P05091 517 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 MCF2P10911 925 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 PROZP22891 400 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 NMT1P30419 496 aaKnown RBP16.47■□□□□ 0.23
UPF1-202ENST00000594243 CCDC85BQ15834 202 aaPredicted RBP16.47■□□□□ 0.23
UPF1-202ENST00000594243 SFR1Q86XK3 245 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 MICALL1Q8N3F8 863 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 HVCN1Q96D96 273 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 RPS6KC1Q96S38 1066 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 FIZ1Q96SL8 496 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 C7orf25Q9BPX7 421 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 TMEM175Q9BSA9 504 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 TRIM9Q9C026 710 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 GBP3Q9H0R5 595 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 OLFML3Q9NRN5 406 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 NLRC5Q86WI3 1866 aa16.47■□□□□ 0.23
UPF1-202ENST00000594243 GOLGA6L4A6NEF3 574 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 CLDN3O15551 220 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 NR1I2O75469 434 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 DDHD2O94830 711 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 SLFN14P0C7P3 912 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 PFKFB1P16118 471 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 GRM5P41594 1212 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 MATR3P43243 847 aaKnown RBP eCLIP16.46■□□□□ 0.23
UPF1-202ENST00000594243 LIG4P49917 911 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 AFF1P51825 1210 aaKnown RBP16.46■□□□□ 0.23
UPF1-202ENST00000594243 YARSP54577 528 aaKnown RBP16.46■□□□□ 0.23
UPF1-202ENST00000594243 CNNM4Q6P4Q7 775 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 ZBTB33Q86T24 672 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 ZNF280BQ86YH2 543 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 POF1BQ8WVV4 589 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 ZFP42Q96MM3 310 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 CCDC94Q9BW85 323 aaPredicted RBP16.46■□□□□ 0.23
UPF1-202ENST00000594243 CDT1Q9H211 546 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 GDPD2Q9HCC8 539 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 MIOSQ9NXC5 875 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 KLK14Q9P0G3 267 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 SERTAD1Q9UHV2 236 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 LZTS1Q9Y250 596 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 HPSEQ9Y251 543 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 GDAQ9Y2T3 454 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 PCDHB13Q9Y5F0 798 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 CDH23Q9H251 3354 aa16.46■□□□□ 0.23
UPF1-202ENST00000594243 EYSQ5T1H1 3165 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 FAM237AA0A1B0GTK4 181 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 HNRNPDLO14979 420 aaKnown RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 RECQL4O94761 1208 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 PIGRP01833 764 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 GALTP07902 379 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 SYKP43405 635 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 SCNN1GP51170 649 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 ASIC1P78348 528 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 MCL1Q07820 350 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 GRIK3Q13003 919 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 ALCAMQ13740 583 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 TIGD5Q53EQ6 642 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 ZC2HC1CQ53FD0 456 aaPredicted RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 PDE12Q6L8Q7 609 aaKnown RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 MAP4K3Q8IVH8 894 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 SLC39A11Q8N1S5 342 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 MRPS27Q92552 414 aaKnown RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 ZBTB45Q96K62 511 aaPredicted RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 ACAP3Q96P50 834 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms