RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 NEDD9Q14511 834 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 LDLRAD1Q5T700 205 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 METTL13Q8N6R0 699 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 EPS8L1Q8TE68 723 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 ARHGEF26Q96DR7 871 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 THAP2Q9H0W7 228 aa21.27■□□□□ 0.99
CLIP3-206ENST00000593074 SEPT11Q9NVA2 429 aaKnown RBP21.27■□□□□ 0.99
CLIP3-206ENST00000593074 MFAP3P55082 362 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 HADHBP55084 474 aaKnown RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 MRPS25P82663 173 aaKnown RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 GPR162Q16538 588 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 Q3C1V9 767 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 GPAT2Q6NUI2 795 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 PPM1KQ8N3J5 372 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 RASGEF1CQ8N431 466 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 FBXL13Q8NEE6 735 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 HELQQ8TDG4 1101 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 CALR3Q96L12 384 aaKnown RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 CEP89Q96ST8 783 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 POP1Q99575 1024 aaKnown RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 ISCUQ9H1K1 167 aa21.26■□□□□ 0.99
CLIP3-206ENST00000593074 TOPORSQ9NS56 1045 aaPredicted RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 NOCTQ9UK39 431 aaKnown RBP21.26■□□□□ 0.99
CLIP3-206ENST00000593074 EPHB4P54760 987 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 TNNC1P63316 161 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 TCEAL1Q15170 157 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 PNMA8AQ86V59 439 aaPredicted RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 FAM71BQ8TC56 605 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 SLC10A4Q96EP9 437 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 BICD1Q96G01 975 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 NIFKQ9BYG3 293 aaKnown RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 PORCNQ9H237 461 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 R3HDMLQ9H3Y0 253 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 GDF3Q9NR23 364 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 A0A0U1RQG5 324 aaPredicted RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 PGRMC1O00264 195 aaKnown RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 FARP2O94887 1054 aaPredicted RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 KCTD2Q14681 263 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 EMBQ6PCB8 327 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 RHOT2Q8IXI1 618 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 RPUSD2Q8IZ73 545 aaKnown RBP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 TAS1R2Q8TE23 839 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 SCFD2Q8WU76 684 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 KRT12Q99456 494 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 HINFPQ9BQA5 517 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.25■□□□□ 0.99
CLIP3-206ENST00000593074 RAB20Q9NX57 234 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 STYXL1Q9Y6J8 313 aa21.25■□□□□ 0.99
CLIP3-206ENST00000593074 GSTTP1A0A1W2PQM5 241 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 CEP104O60308 925 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 GLI1P08151 1106 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 SNAPC2Q13487 334 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 PTPROQ16827 1216 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 HSP90B2PQ58FF3 399 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 SV2AQ7L0J3 742 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 NOP9Q86U38 636 aaKnown RBP21.24■□□□□ 0.99
CLIP3-206ENST00000593074 CCDC102AQ96A19 550 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 NT5C1BQ96P26 610 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 KIAA1586Q9HCI6 787 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 AMFRQ9UKV5 643 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 HEXIM1O94992 359 aaKnown RBP21.24■□□□□ 0.99
CLIP3-206ENST00000593074 SGPL1O95470 568 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 PIGRP01833 764 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 PGK2P07205 417 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 CHRNB2P17787 502 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 NAMPTP43490 491 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 EEPD1Q7L9B9 569 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 IFT20Q8IY31 132 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 ASAP3Q8TDY4 903 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 CAVIN3Q969G5 261 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 TMEM143Q96AN5 459 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 GDAP1L1Q96MZ0 367 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 MMP19Q99542 508 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 FAM213AQ9BRX8 229 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 NRBP2Q9NSY0 501 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 COG5Q9UP83 839 aa21.24■□□□□ 0.99
CLIP3-206ENST00000593074 NOC2LQ9Y3T9 749 aaKnown RBP21.24■□□□□ 0.99
CLIP3-206ENST00000593074 EXTL3O43909 919 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 GLRA2P23416 452 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 ARL2P36404 184 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 LIG4P49917 911 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 RNASE9P60153 205 aaKnown RBP21.23■□□□□ 0.99
CLIP3-206ENST00000593074 CLDN10P78369 228 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 PRPF4BQ13523 1007 aaKnown RBP21.23■□□□□ 0.99
CLIP3-206ENST00000593074 C15orf39Q6ZRI6 1047 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 ZNF771Q7L3S4 317 aaPredicted RBP21.23■□□□□ 0.99
CLIP3-206ENST00000593074 PCYT2Q99447 389 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 MROH8Q9H579 483 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 CLEC11AQ9Y240 323 aa21.23■□□□□ 0.99
CLIP3-206ENST00000593074 ZNF233A6NK53 670 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 KIAA0391O15091 583 aaKnown RBP21.22■□□□□ 0.99
CLIP3-206ENST00000593074 RTN2O75298 545 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 FTLP02792 175 aaPredicted RBP21.22■□□□□ 0.99
CLIP3-206ENST00000593074 DLATP10515 647 aaKnown RBP21.22■□□□□ 0.99
CLIP3-206ENST00000593074 GZMAP12544 262 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 GJA5P36382 358 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 USP8P40818 1118 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 RFC5P40937 340 aa21.22■□□□□ 0.99
CLIP3-206ENST00000593074 STRN3Q13033 797 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms