RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 PCDHB14Q9Y5E9 798 aa9.22□□□□□ -0.93
SMAD4-209ENST00000589941 KIAA1217Q5T5P2 1943 aa9.21□□□□□ -0.93
SMAD4-209ENST00000589941 E9PSI1 815 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 MYL3P08590 195 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 SUPT20HL2P0C7V6 817 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 CYP7A1P22680 504 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 COPB2P35606 906 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 HTRA4P83105 476 aaPredicted RBP9.21□□□□□ -0.94
SMAD4-209ENST00000589941 CLCQ05315 142 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 RAD51AP2Q09MP3 1159 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 TAPT1Q6NXT6 567 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 CNKSR3Q6P9H4 555 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 TMEM179Q6ZVK1 233 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 CENPQQ7L2Z9 268 aaPredicted RBP9.21□□□□□ -0.94
SMAD4-209ENST00000589941 FAM13CQ8NE31 585 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 SEZ6LQ9BYH1 1024 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 ZFP64Q9NPA5 681 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 HOMER2Q9NSB8 354 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 DENND4AQ7Z401 1863 aa9.21□□□□□ -0.94
SMAD4-209ENST00000589941 GPR179Q6PRD1 2367 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 GRM6O15303 877 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 CXCL10P02778 98 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 OXCT1P55809 520 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 PTPN21Q16825 1174 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 LETMD1Q6P1Q0 360 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 GK5Q6ZS86 529 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 LRRC8DQ7L1W4 858 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 TTC6Q86TZ1 520 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 DTX1Q86Y01 620 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 SLITRK4Q8IW52 837 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 ZNF654Q8IZM8 581 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 CPXCR1Q8N123 301 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 ANKRD35Q8N283 1001 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 PLD6Q8N2A8 252 aaKnown RBP9.2□□□□□ -0.94
SMAD4-209ENST00000589941 RAVER2Q9HCJ3 691 aaKnown RBP9.2□□□□□ -0.94
SMAD4-209ENST00000589941 DLL3Q9NYJ7 618 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 CLEC1BQ9P126 229 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 KLHL3Q9UH77 587 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 CTNNA3Q9UI47 895 aa9.2□□□□□ -0.94
SMAD4-209ENST00000589941 ZEB2O60315 1214 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 GLP2RO95838 553 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 LINC00271P0C7V0 271 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 EEF2P13639 858 aaKnown RBP9.19□□□□□ -0.94
SMAD4-209ENST00000589941 SP100P23497 879 aaPredicted RBP9.19□□□□□ -0.94
SMAD4-209ENST00000589941 PUM1Q14671 1186 aaKnown RBP eCLIP9.19□□□□□ -0.94
SMAD4-209ENST00000589941 GORABQ5T7V8 394 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 MCTP2Q6DN12 878 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 ADGRD2Q7Z7M1 963 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 CDH24Q86UP0 819 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 TMEM192Q8IY95 271 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 SMRP1Q8NCR6 262 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 RPGRIP1Q96KN7 1286 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 RIPOR3Q96MK2 946 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 SLF1Q9BQI6 1058 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 PLAGL2Q9UPG8 496 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.19□□□□□ -0.94
SMAD4-209ENST00000589941 USP15Q9Y4E8 981 aaPredicted RBP9.19□□□□□ -0.94
SMAD4-209ENST00000589941 NBEAQ8NFP9 2946 aa9.19□□□□□ -0.94
SMAD4-209ENST00000589941 ATE1O95260 518 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 EYA4O95677 639 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 UBTFL1P0CB47 393 aaPredicted RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 ICAM3P32942 547 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 MCM4P33991 863 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 NDUFV1P49821 464 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 RBM10P98175 930 aaKnown RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 SLFN5Q08AF3 891 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 PAK2Q13177 524 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 BFSP2Q13515 415 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 ACAP1Q15027 740 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 LRRFIP1Q32MZ4 808 aaKnown RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 MYOCDQ8IZQ8 938 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 AFAP1L1Q8TED9 768 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 RIOK1Q9BRS2 568 aaKnown RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 MTG1Q9BT17 334 aaPredicted RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 EHMT1Q9H9B1 1298 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 A1CFQ9NQ94 594 aaKnown RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 BARX2Q9UMQ3 279 aaPredicted RBP9.18□□□□□ -0.94
SMAD4-209ENST00000589941 INSL6Q9Y581 213 aa9.18□□□□□ -0.94
SMAD4-209ENST00000589941 CYP2D7A0A087X1C5 515 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 LOC100996750A0A140TA64 210 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 ABHD14A-ACY1A0A1B0GW23 586 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 UQCRFS1P1P0C7P4 283 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 CHMP4BP1P59074 171 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 ADAM15Q13444 863 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 CAMK1Q14012 370 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 PTGISQ16647 500 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 CWF19L1Q69YN2 538 aaKnown RBP9.17□□□□□ -0.94
SMAD4-209ENST00000589941 NFXL1Q6ZNB6 911 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 KRTAP4-6Q9BYQ5 205 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 SH2D4AQ9H788 454 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 TPX2Q9ULW0 747 aaKnown RBP9.17□□□□□ -0.94
SMAD4-209ENST00000589941 LOXHD1Q8IVV2 1947 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 PATJQ8NI35 1801 aa9.17□□□□□ -0.94
SMAD4-209ENST00000589941 SLC22A31A6NKX4 558 aa9.16□□□□□ -0.94
SMAD4-209ENST00000589941 ATP2A1O14983 1001 aa9.16□□□□□ -0.94
SMAD4-209ENST00000589941 IDH1O75874 414 aaKnown RBP9.16□□□□□ -0.94
SMAD4-209ENST00000589941 CEACAM5P06731 702 aa9.16□□□□□ -0.94
SMAD4-209ENST00000589941 CKBP12277 381 aa9.16□□□□□ -0.94
SMAD4-209ENST00000589941 TCF3P15923 654 aa9.16□□□□□ -0.94
SMAD4-209ENST00000589941 ITIH2P19823 946 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms