RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 COPS5Q92905 334 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 NT5C1BQ96P26 610 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 FNBP1Q96RU3 617 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 MRPL4Q9BYD3 311 aaKnown RBP15.35■□□□□ 0.05
LIG3-205ENST00000585941 ARGLU1Q9NWB6 273 aaPredicted RBP15.35■□□□□ 0.05
LIG3-205ENST00000585941 RAB20Q9NX57 234 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 CAPN6Q9Y6Q1 641 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 COL1A2P08123 1366 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 A0A0A6YYK5 440 aaPredicted RBP15.35■□□□□ 0.05
LIG3-205ENST00000585941 MANSC4A6NHS7 340 aaPredicted RBP15.35■□□□□ 0.05
LIG3-205ENST00000585941 ENC1O14682 589 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 MAGEB2O15479 319 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 PPFIA4O75335 1185 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 NAP1L1P55209 391 aaKnown RBP15.35■□□□□ 0.05
LIG3-205ENST00000585941 HUNKP57058 714 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 MAPK6Q16659 721 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 MAML3Q96JK9 1138 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 PTPN18Q99952 460 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 MSTO1Q9BUK6 570 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 KATNBL1Q9H079 304 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 ABHD16BQ9H3Z7 469 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 SUGCTQ9HAC7 445 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 SNX12Q9UMY4 172 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 PCDHGC5Q9Y5F6 944 aa15.35■□□□□ 0.05
LIG3-205ENST00000585941 SRCAPQ6ZRS2 3230 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 FOXN3O00409 490 aaPredicted RBP15.34■□□□□ 0.05
LIG3-205ENST00000585941 DDX3XO00571 662 aaKnown RBP eCLIP15.34■□□□□ 0.05
LIG3-205ENST00000585941 TUBBP07437 444 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 TNFAIP3P21580 790 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 MATR3P43243 847 aaKnown RBP eCLIP15.34■□□□□ 0.05
LIG3-205ENST00000585941 AP3M2P53677 418 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 POU5F1BQ06416 359 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 TEX35Q5T0J7 233 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 CST9Q5W186 159 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 SV2AQ7L0J3 742 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 ARHGEF19Q8IW93 802 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 LMBR1Q8WVP7 490 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 SYT11Q9BT88 431 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 TARS2Q9BW92 718 aaKnown RBP15.34■□□□□ 0.05
LIG3-205ENST00000585941 CCDC113Q9H0I3 377 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 SUCLA2Q9P2R7 463 aaPredicted RBP15.34■□□□□ 0.05
LIG3-205ENST00000585941 HYOU1Q9Y4L1 999 aa15.34■□□□□ 0.05
LIG3-205ENST00000585941 ADGRA2Q96PE1 1338 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 CLDN3O15551 220 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 RRP9O43818 475 aaKnown RBP15.33■□□□□ 0.04
LIG3-205ENST00000585941 TOM1L1O75674 476 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 SNAI1O95863 264 aaPredicted RBP15.33■□□□□ 0.04
LIG3-205ENST00000585941 LGALS2P05162 132 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 DLATP10515 647 aaKnown RBP15.33■□□□□ 0.04
LIG3-205ENST00000585941 KLRC1P26715 233 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 GRM1Q13255 1194 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 IQSEC1Q6DN90 963 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 C15orf39Q6ZRI6 1047 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 FAM71AQ8IYT1 594 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 SHC3Q92529 594 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 CALR3Q96L12 384 aaKnown RBP15.33■□□□□ 0.04
LIG3-205ENST00000585941 TINF2Q9BSI4 451 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 NFKBIZQ9BYH8 718 aa15.33■□□□□ 0.04
LIG3-205ENST00000585941 PUF60Q9UHX1 559 aaKnown RBP15.33■□□□□ 0.04
LIG3-205ENST00000585941 MSCO60682 206 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 ITGBL1O95965 494 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 H2AFXP16104 143 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 GCNT1Q02742 428 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 MKRN4PQ13434 485 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 SURF1Q15526 300 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 DUSP28Q4G0W2 176 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 SMYD5Q6GMV2 418 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 PPM1KQ8N3J5 372 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 RNF149Q8NC42 400 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 U2AF1L4Q8WU68 220 aaKnown RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 AGPAT1Q99943 283 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 PDCL3Q9H2J4 239 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 RBAKQ9NYW8 714 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 ANKFY1Q9P2R3 1169 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 HDAC6Q9UBN7 1215 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 RNF14Q9UBS8 474 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 SALL4Q9UJQ4 1053 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 EVPLQ92817 2033 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 ZSWIM8A7E2V4 1837 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 PRKCBP05771 671 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 PNMA6AP0CW24 399 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 SRGAP2CP0DJJ0 459 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 HOXD8P13378 290 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 TNNI1P19237 187 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 INHBEP58166 350 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 NLRP11P59045 1033 aaKnown RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 DRP2Q13474 957 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 ACVR2BQ13705 512 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 ZACNQ401N2 412 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 EFCAB12Q6NXP0 572 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 CRELD2Q6UXH1 353 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 GLYCTKQ8IVS8 523 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 LRRC71Q8N4P6 559 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 LNX1Q8TBB1 728 aaPredicted RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 TAS1R2Q8TE23 839 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 SEMA4DQ92854 862 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 POP1Q99575 1024 aaKnown RBP15.32■□□□□ 0.04
LIG3-205ENST00000585941 CGRRF1Q99675 332 aa15.32■□□□□ 0.04
LIG3-205ENST00000585941 ACO2Q99798 780 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms