RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, human

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCE1-215	ENST00000578995	DYNC1LI2	O43237	492 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SORBS3	O60504	671 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	NEMF	O60524	1076 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CCNT1	O60563	726 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CD4	P01730	458 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	C6orf222	P0C671	652 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SUPT20HL2	P0C7V6	817 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZNF286B	P0CG31	522 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CAPN2	P17655	700 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PDC	P20941	246 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	FUT4	P22083	530 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CNGA1	P29973	690 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TCF7	P36402	384 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PRPH	P41219	470 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PSMC6	P62333	389 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CYP27A1	Q02318	531 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RBL2	Q08999	1139 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TRIM29	Q14134	588 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	NEDD9	Q14511	834 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TARBP2	Q15633	366 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	KCNA10	Q16322	511 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MLANA	Q16655	118 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LRRC26	Q2I0M4	334 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TRIM71	Q2Q1W2	868 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RILPL1	Q5EBL4	403 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MARCH8	Q5T0T0	291 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	AXDND1	Q5T1B0	1012 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CXCL17	Q6UXB2	119 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZNF574	Q6ZN55	896 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	NLRX1	Q86UT6	975 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	FAM126B	Q8IXS8	530 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	DHX37	Q8IY37	1157 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	OR6J1	Q8NGC5	347 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PPP1R13L	Q8WUF5	828 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	DHX38	Q92620	1227 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RELT	Q969Z4	430 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PAWR	Q96IZ0	340 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CDHR1	Q96JP9	859 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	FAM20A	Q96MK3	541 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MPHOSPH6	Q99547	160 aa	Known RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	HSD17B14	Q9BPX1	270 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZNF577	Q9BSK1	485 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LACRT	Q9GZZ8	138 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RNPEP	Q9H4A4	650 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	EHMT1	Q9H9B1	1298 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LRRC4C	Q9HCJ2	640 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SLC9A2	Q9UBY0	812 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	FBXO2	Q9UK22	296 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	KIF3A	Q9Y496	699 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CLIC4	Q9Y696	253 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TSC2	P49815	1807 aa		4.27	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LAMA2	P24043	3122 aa	Known RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CHD9	Q3L8U1	2897 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LAMA3	Q16787	3333 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995		A0A087X0B3	334 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MBLAC1	A4D2B0	266 aa	Predicted RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MEGF11	A6BM72	1044 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	TMEM150B	A6NC51	233 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PP2D1	A8MPX8	630 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	DDX39A	O00148	427 aa	Known RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MMP20	O60882	483 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PPFIA4	O75335	1185 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MED24	O75448	989 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SLITRK3	O94933	977 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LYPLA2	O95372	231 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RNASE1	P07998	156 aa	Known RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	OR52Z1	P0C646	297 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ITGB8	P26012	769 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CDC25B	P30305	580 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	MCM7	P33993	719 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ADM	P35318	185 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CPT1A	P50416	773 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	NCOA4	Q13772	614 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	GPNMB	Q14956	572 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SLC39A14	Q15043	492 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PLCB4	Q15147	1175 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SAFB	Q15424	915 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SF3A1	Q15459	793 aa	Known RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZNF174	Q15697	407 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	CALCRL	Q16602	461 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	HYI	Q5T013	277 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LRCH2	Q5VUJ6	765 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ARL6IP4	Q66PJ3	421 aa	Known RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SLC39A5	Q6ZMH5	540 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	USP49	Q70CQ1	688 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ANO5	Q75V66	913 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	PLPPR4	Q7Z2D5	763 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ANKRD33	Q7Z3H0	272 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	KCNK18	Q7Z418	384 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RNF180	Q86T96	592 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SMAP1	Q8IYB5	467 aa	Predicted RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	LINC00301	Q8NCQ3	95 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ARRDC4	Q8NCT1	418 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	GIMAP8	Q8ND71	665 aa	Predicted RBP	4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	RDM1	Q8NG50	284 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	SEPT1	Q8WYJ6	367 aa		4.26	□□□□□ -1.73
SMARCE1-215	ENST00000578995	ZBTB10	Q96DT7	871 aa		4.26	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms