RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SPATA31C1P0DKV0 1188 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 ARF4P18085 180 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 SP100P23497 879 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 OR1G1P47890 313 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 RBM25P49756 843 aaKnown RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 RARS2Q5T160 578 aaKnown RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 MAEAQ7L5Y9 396 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 CABP7Q86V35 215 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 CATSPER3Q86XQ3 398 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 NACC1Q96RE7 527 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 GAD1Q99259 594 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 APOL6Q9BWW8 343 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 VN1R3Q9BXE9 311 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 SH2B1Q9NRF2 756 aaPredicted RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 MRPL17Q9NRX2 175 aaKnown RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 DBR1Q9UK59 544 aaKnown RBP15.18■□□□□ 0.02
CCDC40-216ENST00000576241 HES2Q9Y543 173 aa15.18■□□□□ 0.02
CCDC40-216ENST00000576241 ARID2Q68CP9 1835 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 A0A087WWV3 80 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 URODP06132 367 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 EPCAMP16422 314 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 KLRC2P26717 231 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 PUM1Q14671 1186 aaKnown RBP eCLIP15.17■□□□□ 0.02
CCDC40-216ENST00000576241 ZNF174Q15697 407 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 AMHR2Q16671 573 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 HAUS3Q68CZ6 603 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 SLC27A1Q6PCB7 646 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 NOSTRINQ8IVI9 506 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 ZBTB8OSQ8IWT0 167 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 KIAA2013Q8IYS2 634 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 KREMEN2Q8NCW0 462 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 SLC22A17Q8WUG5 538 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 POLR3CQ9BUI4 534 aaPredicted RBP15.17■□□□□ 0.02
CCDC40-216ENST00000576241 NXF3Q9H4D5 531 aaKnown RBP15.17■□□□□ 0.02
CCDC40-216ENST00000576241 POMKQ9H5K3 350 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 GPRC5CQ9NQ84 441 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 CDH22Q9UJ99 828 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 NOL7Q9UMY1 257 aaKnown RBP15.17■□□□□ 0.02
CCDC40-216ENST00000576241 SSX2IPQ9Y2D8 614 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 GIT1Q9Y2X7 761 aa15.17■□□□□ 0.02
CCDC40-216ENST00000576241 PRG3Q9Y2Y8 225 aaPredicted RBP15.17■□□□□ 0.02
CCDC40-216ENST00000576241 ARHGEF35A5YM69 484 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 INPPL1O15357 1258 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 B4GALT5O43286 388 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 MED24O75448 989 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 RPA1P27694 616 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 TRAPPC10P48553 1259 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 SCNN1GP51170 649 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 TMEM132AQ24JP5 1023 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 TTC38Q5R3I4 469 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 ATAT1Q5SQI0 421 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 ASTLQ6HA08 431 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-216ENST00000576241 KIAA1841Q6NSI8 718 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 POTEGQ6S5H5 508 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 COLGALT2Q8IYK4 626 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 C12orf76Q8N812 135 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-216ENST00000576241 FBXO18Q8NFZ0 1043 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 ZFP42Q96MM3 310 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 RNF39Q9H2S5 420 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 SFXN1Q9H9B4 322 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 PRMT7Q9NVM4 692 aaPredicted RBP15.16■□□□□ 0.02
CCDC40-216ENST00000576241 CHD8Q9HCK8 2581 aa15.16■□□□□ 0.02
CCDC40-216ENST00000576241 MAP1BP46821 2468 aaKnown RBP15.16■□□□□ 0.02
CCDC40-216ENST00000576241 CFAP47Q6ZTR5 3102 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 A0A1B0GUA9 196 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 C2CD2LO14523 706 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 NPTXRO95502 500 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 BRD1O95696 1058 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 SOD2P04179 222 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 CNPP09543 421 aaKnown RBP15.15■□□□□ 0.02
CCDC40-216ENST00000576241 WEE2P0C1S8 567 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 DSC1Q08554 894 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 ELMSAN1Q6PJG2 1045 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 TMC5Q6UXY8 1006 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 TDRD5Q8NAT2 981 aaKnown RBP15.15■□□□□ 0.02
CCDC40-216ENST00000576241 PRIMPOLQ96LW4 560 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 KLHL5Q96PQ7 755 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 HERC2P3Q9BVR0 1158 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 C2orf40Q9H1Z8 148 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 SPTBN2O15020 2390 aa15.15■□□□□ 0.02
CCDC40-216ENST00000576241 ZMYM2Q9UBW7 1377 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 C2CD4DB7Z1M9 353 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 ADH1AP07327 375 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 MUTP22033 750 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 AKAP5P24588 427 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 CCT6AP40227 531 aaKnown RBP15.14■□□□□ 0.01
CCDC40-216ENST00000576241 GLUD2P49448 558 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 CLCN4P51793 760 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 MTMR3Q13615 1198 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 MAPK6Q16659 721 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 CDCA2Q69YH5 1023 aaPredicted RBP15.14■□□□□ 0.01
CCDC40-216ENST00000576241 PADI6Q6TGC4 694 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 PPP4R3CPQ6ZMV5 832 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 CDR2LQ86X02 465 aaPredicted RBP15.14■□□□□ 0.01
CCDC40-216ENST00000576241 UBALD2Q8IYN6 164 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 DEPTORQ8TB45 409 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 KCNG4Q8TDN1 519 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 RPS6KC1Q96S38 1066 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 COLEC11Q9BWP8 271 aa15.14■□□□□ 0.01
CCDC40-216ENST00000576241 SMOC2Q9H3U7 446 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms