RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 KIR2DL2P43627 348 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 CCT5P48643 541 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 MMP14P50281 582 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 TERF1P54274 439 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 GABREP78334 506 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 CHRNEQ04844 493 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 CHRNDQ07001 517 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 STK3Q13188 491 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 KCNAB2Q13303 367 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 LONRF1Q17RB8 773 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 RABL6Q3YEC7 729 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 COBLL1Q53SF7 1204 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 FAM133BQ5BKY9 247 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 JAKMIP3Q5VZ66 844 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 PPP4R3AQ6IN85 833 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 DENND5AQ6IQ26 1287 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 LHFPL2Q6ZUX7 228 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 USP50Q70EL3 339 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 LDHDQ86WU2 507 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 CPNE8Q86YQ8 564 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 DDX1Q92499 740 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 DPF2Q92785 391 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 PTPRN2Q92932 1015 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 C1orf159Q96HA4 380 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 SUCLG2Q96I99 432 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 MMP19Q99542 508 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 MRPL4Q9BYD3 311 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 COA1Q9GZY4 146 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 CHMP4BQ9H444 224 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 TAF1DQ9H5J8 278 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 BICC1Q9H694 974 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 DBNDD1Q9H9R9 158 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 NDOR1Q9UHB4 597 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 KCNG1Q9UIX4 513 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 RCAN3Q9UKA8 241 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 PNMA8BQ9ULN7 279 aaPredicted RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 NUB1Q9Y5A7 615 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 DGKBQ9Y6T7 804 aa7.08□□□□□ -1.28
VPS53-212ENST00000572259 POLR2AP24928 1970 aaKnown RBP7.08□□□□□ -1.28
VPS53-212ENST00000572259 MROH5Q6ZUA9 1318 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 PRSS47A8MTI9 375 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 FIBPO43427 364 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 NPHS1O60500 1241 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 EFCAB14O75071 495 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 ADAMTS4O75173 837 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 PDE1CQ14123 709 aaPredicted RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 SLC9A5Q14940 896 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 NTRK3Q16288 839 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 EPHA10Q5JZY3 1008 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 DACT2Q5SW24 774 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 MZT2AQ6P582 158 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 PDXDC1Q6P996 788 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 C1orf228Q6PIY5 440 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 CEP128Q6ZU80 1094 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 MAMDC2Q7Z304 686 aaPredicted RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 ZNF804AQ7Z570 1209 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 TTC30BQ8N4P2 665 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 CNTD1Q8N815 330 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 TMEM52Q8NDY8 209 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 PDZD8Q8NEN9 1154 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 LINC01599Q8WXQ3 324 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 HHIPL1Q96JK4 782 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 TCF7L1Q9HCS4 588 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 NLRC4Q9NPP4 1024 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 ADARB2Q9NS39 739 aaKnown RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 KLHL11Q9NVR0 708 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 GPRC5DQ9NZD1 345 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 IP6K2Q9UHH9 426 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 TMEFF2Q9UIK5 374 aaPredicted RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 CNOT7Q9UIV1 285 aaKnown RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 PHTF1Q9UMS5 762 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 CTDP1Q9Y5B0 961 aaPredicted RBP7.07□□□□□ -1.28
VPS53-212ENST00000572259 MED23Q9ULK4 1368 aa7.07□□□□□ -1.28
VPS53-212ENST00000572259 TNKSO95271 1327 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 MYO3BQ8WXR4 1341 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQ45 241 aaPredicted RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 A0A1W2PQY0 241 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 FITM1A5D6W6 292 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 FADS2P1A8MWK0 482 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 PSMD14O00487 310 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 MYO1BO43795 1136 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 USP2O75604 605 aaPredicted RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 GNAI2P04899 355 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 RBP3P10745 1247 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 RAC2P15153 192 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 RRM1P23921 792 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 GMPSP49915 693 aaPredicted RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 RTP1P59025 263 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 CDC37Q16543 378 aaPredicted RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 CAVIN4Q5BKX8 364 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 METTL24Q5JXM2 366 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 RSPO2Q6UXX9 243 aaPredicted RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 NFXL1Q6ZNB6 911 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 C15orf52Q6ZUT6 534 aaKnown RBP7.06□□□□□ -1.28
VPS53-212ENST00000572259 TPH2Q8IWU9 490 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 AGBL3Q8NEM8 1001 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 CDK5RAP3Q96JB5 506 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 CHAMP1Q96JM3 812 aa7.06□□□□□ -1.28
VPS53-212ENST00000572259 TNIP3Q96KP6 325 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms