RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MFAP3P55082 362 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 EIF3BP55884 814 aaKnown RBP24.52■■□□□ 1.52
VPS53-211ENST00000571805 KRT71Q3SY84 523 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 XKR9Q5GH70 373 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 MICALL1Q8N3F8 863 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 SLC17A8Q8NDX2 589 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 HELQQ8TDG4 1101 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 WNT8AQ9H1J5 351 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 FER1L6Q2WGJ9 1857 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 CYP1A2P05177 515 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 JAK3P52333 1124 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 TTC27Q6P3X3 843 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 MAP4K3Q8IVH8 894 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 SAMD3Q8N6K7 520 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 SAAL1Q96ER3 474 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 KIAA1683Q9H0B3 1180 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 PPANQ9NQ55 473 aaKnown RBP24.51■■□□□ 1.51
VPS53-211ENST00000571805 GRHL1Q9NZI5 618 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 SCAF8Q9UPN6 1271 aaKnown RBP24.51■■□□□ 1.51
VPS53-211ENST00000571805 PCDHA3Q9Y5H8 950 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 WDR64B1ANS9 1081 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 GGPS1O95749 300 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 PYGMP11217 842 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 MYCLP12524 364 aaPredicted RBP24.51■■□□□ 1.51
VPS53-211ENST00000571805 TMOD1P28289 359 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 CNGA1P29973 690 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 NPTX2P47972 431 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 PLTPP55058 493 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 ODF2Q5BJF6 829 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 KRT39Q6A163 491 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 FBXO25Q8TCJ0 367 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 TLCD1Q96CP7 247 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 POP1Q99575 1024 aaKnown RBP24.51■■□□□ 1.51
VPS53-211ENST00000571805 PDCD2LQ9BRP1 358 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 EXOC7Q9UPT5 735 aa24.51■■□□□ 1.51
VPS53-211ENST00000571805 ZNFX1Q9P2E3 1918 aaKnown RBP24.51■■□□□ 1.51
VPS53-211ENST00000571805 MEFVO15553 781 aaPredicted RBP24.5■■□□□ 1.51
VPS53-211ENST00000571805 ERLIN2O94905 339 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 GPC3P51654 580 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 MAGOHP61326 146 aaKnown RBP24.5■■□□□ 1.51
VPS53-211ENST00000571805 CPNE8Q86YQ8 564 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 MAGOHBQ96A72 148 aaKnown RBP24.5■■□□□ 1.51
VPS53-211ENST00000571805 CCDC127Q96BQ5 260 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 KIFC3Q9BVG8 833 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 RASAL2Q9UJF2 1139 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 ZNRF3Q9ULT6 936 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 TRAPPC3O43617 180 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 NUDT17P0C025 328 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 CYP11B1P15538 503 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 SFNP31947 248 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 ANO5Q75V66 913 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 RMDN3Q96TC7 470 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 PABPC3Q9H361 631 aaKnown RBP24.5■■□□□ 1.51
VPS53-211ENST00000571805 PXMP2Q9NR77 195 aa24.5■■□□□ 1.51
VPS53-211ENST00000571805 CCDC169A6NNP5 214 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 PMS2P54278 862 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 ZNF564Q8TBZ8 553 aaPredicted RBP24.49■■□□□ 1.51
VPS53-211ENST00000571805 BTBD6Q96KE9 485 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 NUP85Q9BW27 656 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 TMEM8AQ9HCN3 771 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 GGA2Q9UJY4 613 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 TCRBV7S2A1N4TA0A589 114 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 GMNCA6NCL1 334 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 SHBGP04278 402 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 PAEPP09466 180 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 RPL21P46778 160 aaKnown RBP24.49■■□□□ 1.51
VPS53-211ENST00000571805 SMTNP53814 917 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 KRT76Q01546 638 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 CDR2Q01850 454 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 PPARDQ03181 441 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 IFFO1Q0D2I5 559 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 CYP1B1Q16678 543 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 YTHDF3Q7Z739 585 aaKnown RBP24.49■■□□□ 1.51
VPS53-211ENST00000571805 HVCN1Q96D96 273 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 MFSD14AQ96MC6 490 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 GTF3C4Q9UKN8 822 aa24.49■■□□□ 1.51
VPS53-211ENST00000571805 PODXLO00592 558 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 SEL1L2Q5TEA6 688 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 SLC39A4Q6P5W5 647 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 BSNDQ8WZ55 320 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 DDX1Q92499 740 aaKnown RBP24.48■■□□□ 1.51
VPS53-211ENST00000571805 RNF25Q96BH1 459 aaPredicted RBP24.48■■□□□ 1.51
VPS53-211ENST00000571805 FBXL18Q96ME1 805 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 NTPCRQ9BSD7 190 aaKnown RBP24.48■■□□□ 1.51
VPS53-211ENST00000571805 TOPORSQ9NS56 1045 aaPredicted RBP24.48■■□□□ 1.51
VPS53-211ENST00000571805 WDR81Q562E7 1941 aa24.48■■□□□ 1.51
VPS53-211ENST00000571805 DENND3A2RUS2 1198 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 GRIN3BO60391 1043 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 SIX1Q15475 284 aaPredicted RBP24.47■■□□□ 1.51
VPS53-211ENST00000571805 CCDC137Q6PK04 289 aaKnown RBP24.47■■□□□ 1.51
VPS53-211ENST00000571805 MICALCLQ6ZW33 695 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 TMC2Q8TDI7 906 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 TAS1R2Q8TE23 839 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 RGPD3A6NKT7 1758 aaPredicted RBP24.47■■□□□ 1.51
VPS53-211ENST00000571805 RGPD4Q7Z3J3 1758 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 CAND2O75155 1236 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 RNF207Q6ZRF8 634 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 SLC13A5Q86YT5 568 aaPredicted RBP24.47■■□□□ 1.51
VPS53-211ENST00000571805 C3orf20Q8ND61 904 aa24.47■■□□□ 1.51
VPS53-211ENST00000571805 CYFIP2Q96F07 1278 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms