RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 TMEM173Q86WV6 379 aaPredicted RBP10.77□□□□□ -0.69
CIITA-207ENST00000571545 ZNF280BQ86YH2 543 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 COLGALT2Q8IYK4 626 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 PLCD3Q8N3E9 789 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 TDRD5Q8NAT2 981 aaKnown RBP10.77□□□□□ -0.69
CIITA-207ENST00000571545 CPB2Q96IY4 423 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 TIPINQ9BVW5 301 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 COLEC11Q9BWP8 271 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 EIF2AQ9BY44 585 aaKnown RBP10.77□□□□□ -0.69
CIITA-207ENST00000571545 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.77□□□□□ -0.69
CIITA-207ENST00000571545 LRWD1Q9UFC0 647 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 KCNG1Q9UIX4 513 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 USTQ9Y2C2 406 aa10.77□□□□□ -0.69
CIITA-207ENST00000571545 NRP1O14786 923 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 GABBR2O75899 941 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 DDHD2O94830 711 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 NPTXRO95502 500 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 PRKCBP05771 671 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 KLRC2P26717 231 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 ZXDAP98168 799 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 RBM10P98175 930 aaKnown RBP10.76□□□□□ -0.69
CIITA-207ENST00000571545 SIGLEC14Q08ET2 396 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 PRPF4BQ13523 1007 aaKnown RBP10.76□□□□□ -0.69
CIITA-207ENST00000571545 MTMR3Q13615 1198 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 PTPN21Q16825 1174 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 KRT79Q5XKE5 535 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 C15orf39Q6ZRI6 1047 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 TRIM67Q6ZTA4 783 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 SUGP1Q8IWZ8 645 aaKnown RBP10.76□□□□□ -0.69
CIITA-207ENST00000571545 UBALD2Q8IYN6 164 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 SNX29Q8TEQ0 813 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 FBXL18Q96ME1 805 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 GAD1Q99259 594 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 KIF2CQ99661 725 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 FZD8Q9H461 694 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 NXF3Q9H4D5 531 aaKnown RBP10.76□□□□□ -0.69
CIITA-207ENST00000571545 PARP2Q9UGN5 583 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 PRG3Q9Y2Y8 225 aaPredicted RBP10.76□□□□□ -0.69
CIITA-207ENST00000571545 SF3B1O75533 1304 aaKnown RBP eCLIP10.76□□□□□ -0.69
CIITA-207ENST00000571545 DENND4AQ7Z401 1863 aa10.76□□□□□ -0.69
CIITA-207ENST00000571545 TMEM221A6NGB7 291 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 H3BQV1 296 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 M0R296 226 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 ACKR2O00590 384 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 SCNN1GP51170 649 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 CLCN4P51793 760 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 ELAVL2Q12926 359 aaKnown RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 PTGDRQ13258 359 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 DMP1Q13316 513 aaPredicted RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 USP41Q3LFD5 358 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 RARS2Q5T160 578 aaKnown RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 PDXDC1Q6P996 788 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 DTHD1Q6ZMT9 781 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 CCDC149Q6ZUS6 474 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 MAEAQ7L5Y9 396 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 RNF168Q8IYW5 571 aaPredicted RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 IGSF22Q8N9C0 903 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 SLC22A17Q8WUG5 538 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 HDAC7Q8WUI4 952 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 BCL7CQ8WUZ0 217 aaPredicted RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 ACSF2Q96CM8 615 aaPredicted RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 DRC1Q96MC2 740 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 APOL6Q9BWW8 343 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 APOL5Q9BWW9 433 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 RHOBTB2Q9BYZ6 727 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 NT5C3AQ9H0P0 336 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 BHMT2Q9H2M3 363 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 C17orf75Q9HAS0 396 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 GPRC5CQ9NQ84 441 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 TSHZ2Q9NRE2 1034 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 ADAM28Q9UKQ2 775 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 SORCS3Q9UPU3 1222 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 DNM3Q9UQ16 869 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 HES2Q9Y543 173 aa10.75□□□□□ -0.69
CIITA-207ENST00000571545 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.75□□□□□ -0.69
CIITA-207ENST00000571545 B4GALT5O43286 388 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 SLC26A4O43511 780 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 BMP15O95972 392 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 GLUD1P00367 558 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 SSBP05455 408 aaKnown RBP eCLIP10.74□□□□□ -0.69
CIITA-207ENST00000571545 THP07101 528 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 DSG1Q02413 1049 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 TUSC3Q13454 348 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 ARL6IP4Q66PJ3 421 aaKnown RBP10.74□□□□□ -0.69
CIITA-207ENST00000571545 MCTP1Q6DN14 999 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 HFE2Q6ZVN8 426 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 OTOP3Q7RTS5 596 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 ZDHHC14Q8IZN3 488 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 CMASQ8NFW8 434 aaPredicted RBP10.74□□□□□ -0.69
CIITA-207ENST00000571545 AUTS2Q8WXX7 1259 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 STAMQ92783 540 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 PBXIP1Q96AQ6 731 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 ZFP42Q96MM3 310 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 KLHL5Q96PQ7 755 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 VN1R3Q9BXE9 311 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 PLEKHA4Q9H4M7 779 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 POMKQ9H5K3 350 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 PDZD7Q9H5P4 517 aa10.74□□□□□ -0.69
CIITA-207ENST00000571545 TOPORSQ9NS56 1045 aaPredicted RBP10.74□□□□□ -0.69
CIITA-207ENST00000571545 DDX19AQ9NUU7 478 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms