RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 STAT4Q14765 748 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 CDC42EP5Q6NZY7 148 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 WDR75Q8IWA0 830 aaKnown RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 SLC30A5Q8TAD4 765 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 GRAMD1AQ96CP6 724 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 AGO2Q9UKV8 859 aaKnown RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 SHPRHQ149N8 1683 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 EIF3DO15371 548 aaKnown RBP eCLIP16.32■□□□□ 0.2
CIITA-204ENST00000570546 KDM6AO15550 1401 aaPredicted RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 FGFR2P21802 821 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 CASP7P55210 303 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 DDX27Q96GQ7 796 aaKnown RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 TIPINQ9BVW5 301 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 KCND2Q9NZV8 630 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 PHF20L1A8MW92 1017 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 LPXNO60711 386 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 ZWINTO95229 277 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 ARSEP51690 589 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 METTL23Q86XA0 190 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 ATP11CQ8NB49 1132 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 KCNV2Q8TDN2 545 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 CRAMP1Q96RY5 1269 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 CYTH2Q99418 400 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 M0QYV0 167 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 TNFAIP2Q03169 654 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 ART3Q13508 389 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 FBXW10Q5XX13 1052 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 TTI2Q6NXR4 508 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 TRMT10CQ7L0Y3 403 aaKnown RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 SPATA21Q7Z572 469 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 DDX42Q86XP3 938 aaKnown RBP eCLIP16.32■□□□□ 0.2
CIITA-204ENST00000570546 SUCLA2Q9P2R7 463 aaPredicted RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 THEGQ9P2T0 379 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 TCRBV5S4A2TA0A5A2 114 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 HSPA4LO95757 839 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 LMBRD2Q68DH5 695 aaPredicted RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 JAMLQ86YT9 394 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 PPWD1Q96BP3 646 aaKnown RBP16.32■□□□□ 0.2
CIITA-204ENST00000570546 SERPINI1Q99574 410 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 NBPF3Q9H094 633 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 SLC9A2Q9UBY0 812 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 PCDHA10Q9Y5I2 948 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 DUSP10Q9Y6W6 482 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 SALL1Q9NSC2 1324 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 PAPD7Q5XG87 772 aaKnown RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 PRR5LQ6MZQ0 368 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 ARMCX2Q7L311 632 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 CYFIP1Q7L576 1253 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 XPO6Q96QU8 1125 aaKnown RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 NCAPGQ9BPX3 1015 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 HOXC10Q9NYD6 342 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 RPA1P27694 616 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 LONRF1Q17RB8 773 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 RSRC2Q7L4I2 434 aaKnown RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 FAM193BQ96PV7 902 aaPredicted RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 CELF4Q9BZC1 486 aaKnown RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 CFLARO15519 480 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 KITP10721 976 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 ARFIP2P53365 341 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 ROR1Q01973 937 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 PKN1Q16512 942 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 PPM1NQ8N819 430 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 GOLPH3Q9H4A6 298 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 KBTBD4Q9NVX7 518 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 GPR75-ASB3A0A0A6YYF3 556 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 CCDC195A0A1B0GUA6 201 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 LRRIQ3A6PVS8 624 aaPredicted RBP16.31■□□□□ 0.2
CIITA-204ENST00000570546 ZBTB22O15209 634 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 FOXP2O15409 715 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 ZHX2Q9Y6X8 837 aa16.31■□□□□ 0.2
CIITA-204ENST00000570546 MDM2Q00987 491 aaPredicted RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 TAP1Q03518 808 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 CATSPER3Q86XQ3 398 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 SEC16BQ96JE7 1060 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 MRPL4Q9BYD3 311 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 APOBEC2Q9Y235 224 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 ITIH2P19823 946 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 CDK17Q00537 523 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 CDR2Q01850 454 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 DPY19L2Q6NUT2 758 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 PSPC1Q8WXF1 523 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 CPA5Q8WXQ8 436 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 DBR1Q9UK59 544 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 POLE2P56282 527 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 GJB7Q6PEY0 223 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 ZC3H18Q86VM9 953 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 LRRN4CLQ8ND94 238 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 CASKIN2Q8WXE0 1202 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 SDCCAG3Q96C92 435 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 ARL2BPQ9Y2Y0 163 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 DALRD3Q5D0E6 543 aaKnown RBP16.3■□□□□ 0.2
CIITA-204ENST00000570546 SPDL1Q96EA4 605 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 KLHL11Q9NVR0 708 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 FBXO40Q9UH90 709 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 GGT7Q9UJ14 662 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 L1RE1Q9UN81 338 aa16.3■□□□□ 0.2
CIITA-204ENST00000570546 CNGA1P29973 690 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 PHKA2P46019 1235 aa16.29■□□□□ 0.2
CIITA-204ENST00000570546 SARSP49591 514 aaKnown RBP16.29■□□□□ 0.2
CIITA-204ENST00000570546 Q3C1V9 767 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms