RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 AKR1A1P14550 325 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 GLRA2P23416 452 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 ADCYAP1R1P41586 468 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 PHKA2P46019 1235 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 FXR1P51114 621 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS39-213ENST00000570062 CYP2J2P51589 502 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 VAMP7P51809 220 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 PRMT2P55345 433 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 GRM1Q13255 1194 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 TUBB2AQ13885 445 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 SPA17Q15506 151 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 DCAF17Q5H9S7 520 aaPredicted RBP8.67□□□□□ -1.02
VPS39-213ENST00000570062 FAM43BQ6ZT52 329 aaPredicted RBP8.67□□□□□ -1.02
VPS39-213ENST00000570062 ENOSF1Q7L5Y1 443 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 VPS36Q86VN1 386 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 GPD1LQ8N335 351 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 RDH13Q8NBN7 331 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 AFG1LQ8WV93 481 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 UBE2Q2Q8WVN8 375 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 POMGNT1Q8WZA1 660 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 NRCAMQ92823 1304 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 SLC35C1Q96A29 364 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 MAP7D2Q96T17 732 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 TUBB2BQ9BVA1 445 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 FGFBP2Q9BYJ0 223 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 TSGA10Q9BZW7 698 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 INO80BQ9C086 356 aaPredicted RBP8.67□□□□□ -1.02
VPS39-213ENST00000570062 GPRC5CQ9NQ84 441 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 PDGFCQ9NRA1 345 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 PRMT7Q9NVM4 692 aaPredicted RBP8.67□□□□□ -1.02
VPS39-213ENST00000570062 SUCLA2Q9P2R7 463 aaPredicted RBP8.67□□□□□ -1.02
VPS39-213ENST00000570062 GJD2Q9UKL4 321 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 USP20Q9Y2K6 914 aa8.67□□□□□ -1.02
VPS39-213ENST00000570062 ZMYM2Q9UBW7 1377 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 LRRIQ4A6NIV6 560 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 EIF3CLB5ME19 914 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 CLDN3O15551 220 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 DUSP11O75319 330 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 TOM1L1O75674 476 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SERPING1P05155 500 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SMPD1P17405 629 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 FMO5P49326 533 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 KCNA1Q09470 495 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 LAMTOR4Q0VGL1 99 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 FOXC1Q12948 553 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 CRHR2Q13324 411 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SNRNP35Q16560 246 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 FAM187BQ17R55 369 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SFMBT2Q5VUG0 894 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 CDCA2Q69YH5 1023 aaPredicted RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 KRT39Q6A163 491 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 EFCAB12Q6NXP0 572 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 TRMT1LQ7Z2T5 733 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 ZNF410Q86VK4 478 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 NME8Q8N427 588 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 KIF18AQ8NI77 898 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 NPLOC4Q8TAT6 608 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 PRPF31Q8WWY3 499 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 JAKMIP2Q96AA8 810 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 TMEM143Q96AN5 459 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 EEF2KMTQ96G04 330 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 CALR3Q96L12 384 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 MFSD14AQ96MC6 490 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SPAG5Q96R06 1193 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 FNBP1Q96RU3 617 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 EIF3CQ99613 913 aaKnown RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 DEF6Q9H4E7 631 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 BCAS3Q9H6U6 928 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 SUGCTQ9HAC7 445 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 FAM207AQ9NSI2 230 aaPredicted RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 AIPL1Q9NZN9 384 aa8.66□□□□□ -1.02
VPS39-213ENST00000570062 EPN1Q9Y6I3 576 aaPredicted RBP8.66□□□□□ -1.02
VPS39-213ENST00000570062 SMCHD1A6NHR9 2005 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 TMEM150BA6NC51 233 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 ACKR2O00590 384 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 DYNC1LI2O43237 492 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 KIF5CO60282 957 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 IGHA2P01877 340 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 MMP3P08254 477 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 ZNF865P0CJ78 1059 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 TNNT1P13805 278 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 INSRRP14616 1297 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 UCHL3P15374 230 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 FERP16591 822 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 CYP2B6P20813 491 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 KLRC1P26715 233 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 STAT1P42224 750 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 PSMC4P43686 418 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 TUBB4BP68371 445 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 NKX3-2P78367 333 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 LACTBP83111 547 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 MYL7Q01449 175 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 SP3Q02447 781 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 KCNMA1Q12791 1236 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 PPFIA1Q13136 1202 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 KLHDC7AQ5VTJ3 777 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 E4F1Q66K89 784 aaPredicted RBP8.65□□□□□ -1.02
VPS39-213ENST00000570062 RRAGAQ7L523 313 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 SRGAP1Q7Z6B7 1085 aa8.65□□□□□ -1.02
VPS39-213ENST00000570062 TMEM139Q8IV31 216 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms