RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 PEX3P56589 373 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 ABCC6O95255 1503 aa12.16□□□□□ -0.46
CLN3-238ENST00000569430 AFDNP55196 1824 aaKnown RBP12.16□□□□□ -0.46
CLN3-238ENST00000569430 RIPK2O43353 540 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 KRT16P08779 473 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 UBTFL6P0CB48 400 aaPredicted RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 ZNF543Q08ER8 600 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 MAP7Q14244 749 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 TEKT1Q969V4 418 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 GRAMD1AQ96CP6 724 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 ACCSQ96QU6 501 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 RUSC1Q9BVN2 902 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 TEKT3Q9BXF9 490 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 SMYD3Q9H7B4 428 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 A1CFQ9NQ94 594 aaKnown RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 PCDHB4Q9Y5E5 795 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 LMTK3Q96Q04 1460 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 NOL4O94818 638 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 DESP17661 470 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 COG7P83436 770 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 MKRN3Q13064 507 aaKnown RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 PDIA2Q13087 525 aaKnown RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 SYCP2LQ5T4T6 812 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 BZW1Q7L1Q6 419 aaKnown RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 AGGF1Q8N302 714 aaeCLIP12.15□□□□□ -0.46
CLN3-238ENST00000569430 ELMO3Q96BJ8 720 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 PGM2Q96G03 612 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 ZSWIM1Q9BR11 485 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 ROPN1BQ9BZX4 212 aaPredicted RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 ROPN1Q9HAT0 212 aaPredicted RBP12.15□□□□□ -0.46
CLN3-238ENST00000569430 CD209Q9NNX6 404 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 TAS2R14Q9NYV8 317 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 MARCKSL1P49006 195 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 ARFIP2P53365 341 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 XXYLT1Q8NBI6 393 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 VCX3AQ9NNX9 186 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 SLC12A6Q9UHW9 1150 aa12.15□□□□□ -0.46
CLN3-238ENST00000569430 AP1G2O75843 785 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 KCNA3P22001 575 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 SERPINB4P48594 390 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 CCNHP51946 323 aaPredicted RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 RNASELQ05823 741 aaKnown RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-238ENST00000569430 ARHGAP27Q6ZUM4 889 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 CENPUQ71F23 418 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 IRF2BP2Q7Z5L9 587 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 PIK3R5Q8WYR1 880 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 RBM17Q96I25 401 aaKnown RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 PAPOLBQ9NRJ5 636 aaKnown RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 MAD1L1Q9Y6D9 718 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ZC3H4Q9UPT8 1303 aaKnown RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 RTN2O75298 545 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 PYGMP11217 842 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ITIH2P19823 946 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 LMNB2Q03252 620 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ITPK1Q13572 414 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 GIT2Q14161 759 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 COG2Q14746 738 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 NKX1-1Q15270 411 aaPredicted RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 P3H1Q32P28 736 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ZNF394Q53GI3 561 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 OGFOD1Q8N543 542 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 SMC1BQ8NDV3 1235 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ATL2Q8NHH9 583 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ATP8B4Q8TF62 1192 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ABTB1Q969K4 478 aaPredicted RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 ADAM22Q9P0K1 906 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 PHTF1Q9UMS5 762 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ZBTB12Q9Y330 459 aaPredicted RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 FLT1P17948 1338 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 MYO3BQ8WXR4 1341 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 SLC16A4O15374 487 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 CBX6O95503 412 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 ZCCHC18P0CG32 403 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 EPHB1P54762 984 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 KDSRQ06136 332 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 STAT4Q14765 748 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 CNGA2Q16280 664 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 CPA5Q8WXQ8 436 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 SLC35C1Q96A29 364 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 DNAJC19Q96DA6 116 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 TRAIPQ9BWF2 469 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 IKZF4Q9H2S9 585 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 RXFP1Q9HBX9 757 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 COL5A2P05997 1499 aaPredicted RBP12.14□□□□□ -0.47
CLN3-238ENST00000569430 PFASO15067 1338 aa12.14□□□□□ -0.47
CLN3-238ENST00000569430 TESPA1A2RU30 521 aaPredicted RBP12.13□□□□□ -0.47
CLN3-238ENST00000569430 KIAA0391O15091 583 aaKnown RBP12.13□□□□□ -0.47
CLN3-238ENST00000569430 MRPS35P82673 323 aaKnown RBP12.13□□□□□ -0.47
CLN3-238ENST00000569430 PPP2R5DQ14738 602 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 NFIXQ14938 502 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 GRAMD1BQ3KR37 738 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 SERPINB12Q96P63 405 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 ERVK-5Q9HDB9 667 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 PPFIA2O75334 1257 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 LMNAP02545 664 aaKnown RBP12.13□□□□□ -0.47
CLN3-238ENST00000569430 MARK3P27448 753 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 EPHB2P29323 1055 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 ARSEP51690 589 aa12.13□□□□□ -0.47
CLN3-238ENST00000569430 AUHQ13825 339 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms