RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	NECAB3	Q96P71	396 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	C1QTNF1	Q9BXJ1	281 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	MRPL4	Q9BYD3	311 aa	Known RBP	11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	NXF3	Q9H4D5	531 aa	Known RBP	11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	TMEM134	Q9H6X4	195 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	FOXD4L1	Q9NU39	408 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	DNAJB4	Q9UDY4	337 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	HES2	Q9Y543	173 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	CIT	O14578	2027 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	TRIP11	Q15643	1979 aa		11.41	□□□□□ -0.58
UBR1-207	ENST00000568782	LINC01565	O15544	149 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	STX6	O43752	255 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	TBX10	O75333	385 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	TADA2A	O75478	443 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	DDHD2	O94830	711 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	TH	P07101	528 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	CTSA	P10619	480 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	ALAD	P13716	330 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	SCP2	P22307	547 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	KLRC2	P26717	231 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	ABCD1	P33897	745 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	NPTX2	P47972	431 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	SCNN1G	P51170	649 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	RAD51AP2	Q09MP3	1159 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	COASY	Q13057	564 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	DHX8	Q14562	1220 aa	Known RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	SMAD2	Q15796	467 aa	Known RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	C1orf186	Q6ZWK4	172 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	ADHFE1	Q8IWW8	467 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	BSND	Q8WZ55	320 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	SNX21	Q969T3	373 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	ZFP42	Q96MM3	310 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	MMTAG2	Q9BU76	263 aa	Known RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	CCDC94	Q9BW85	323 aa	Predicted RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	POLD4	Q9HCU8	107 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	KLK14	Q9P0G3	267 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	BARX2	Q9UMQ3	279 aa	Predicted RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	PRG3	Q9Y2Y8	225 aa	Predicted RBP	11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	PCDHGC5	Q9Y5F6	944 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	IRAK3	Q9Y616	596 aa		11.4	□□□□□ -0.58
UBR1-207	ENST00000568782	C2orf71	A6NGG8	1288 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	SFI1	A8K8P3	1242 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	HIDE1	A8MVS5	230 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	INPPL1	O15357	1258 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	TBCA	O75347	108 aa	Known RBP	11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	FAM13A	O94988	1023 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	PLS3	P13797	630 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	CREM	Q03060	361 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	CEBPZ	Q03701	1054 aa	Known RBP	11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	DLX2	Q07687	328 aa	Predicted RBP	11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	TUSC3	Q13454	348 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	ZNF568	Q3ZCX4	644 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	TMEM184A	Q6ZMB5	413 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	COLGALT2	Q8IYK4	626 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	KRI1	Q8N9T8	703 aa	Known RBP	11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	BICD1	Q96G01	975 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	ZNF396	Q96N95	335 aa	Predicted RBP	11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	KIFC3	Q9BVG8	833 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	RUSC1	Q9BVN2	902 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	CCDC113	Q9H0I3	377 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	ZBP1	Q9H171	429 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	RNF39	Q9H2S5	420 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	ZHX3	Q9H4I2	956 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	PDZD7	Q9H5P4	517 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	DZANK1	Q9NVP4	752 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	SNTG2	Q9NY99	539 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	ODF2L	Q9ULJ1	636 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	TNFSF13B	Q9Y275	285 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	GDA	Q9Y2T3	454 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	NCOR1	O75376	2440 aa		11.39	□□□□□ -0.59
UBR1-207	ENST00000568782	XIRP2	A4UGR9	3374 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	C2CD2L	O14523	706 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SLC16A4	O15374	487 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	RECQL4	O94761	1208 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SOD2	P04179	222 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	ADH1A	P07327	375 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	MARCKS	P29966	332 aa	Predicted RBP	11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	GLUD2	P49448	558 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SLC12A3	P55017	1021 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	ITIH3	Q06033	890 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	ELAVL2	Q12926	359 aa	Known RBP	11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	USP41	Q3LFD5	358 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	ANKRD54	Q6NXT1	300 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	GPBP1	Q86WP2	473 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	MYCT1	Q8N699	235 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SMRP1	Q8NCR6	262 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SPIRE2	Q8WWL2	714 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	LARP4B	Q92615	738 aa	Known RBP	11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	MSLNL	Q96KJ4	702 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	PNMA5	Q96PV4	448 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	NTPCR	Q9BSD7	190 aa	Known RBP	11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	CCSER1	Q9C0I3	900 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SLC38A7	Q9NVC3	462 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	CLEC1B	Q9P126	229 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	ADAM28	Q9UKQ2	775 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	CLIC4	Q9Y696	253 aa		11.38	□□□□□ -0.59
UBR1-207	ENST00000568782	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
UBR1-207	ENST00000568782	MYH15	Q9Y2K3	1946 aa		11.37	□□□□□ -0.59
UBR1-207	ENST00000568782	CLDN3	O15551	220 aa		11.37	□□□□□ -0.59

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