RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RPS6KC1Q96S38 1066 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 POLD4Q9HCU8 107 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 CLEC1BQ9P126 229 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 ARHGAP28Q9P2N2 729 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 PARP2Q9UGN5 583 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 MTMR6Q9Y217 621 aa20.6■□□□□ 0.89
CLN3-227ENST00000567495 MORC2Q9Y6X9 1032 aaPredicted RBP20.6■□□□□ 0.89
CLN3-227ENST00000567495 HIDE1A8MVS5 230 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 NRP1O14786 923 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 PLS3P13797 630 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 IL9P15248 144 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 SCP2P22307 547 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 AKAP5P24588 427 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 SCNN1GP51170 649 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 GRIK3Q13003 919 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 SMAD2Q15796 467 aaKnown RBP20.59■□□□□ 0.89
CLN3-227ENST00000567495 ATF7IP2Q5U623 682 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 SMRP1Q8NCR6 262 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 ZFP42Q96MM3 310 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 PLIN2Q99541 437 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 MRPL4Q9BYD3 311 aaKnown RBP20.59■□□□□ 0.89
CLN3-227ENST00000567495 CCSER1Q9C0I3 900 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 ZBP1Q9H171 429 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 TNFSF13BQ9Y275 285 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 BDP1A6H8Y1 2624 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 KIAA1671Q9BY89 1806 aa20.59■□□□□ 0.89
CLN3-227ENST00000567495 TTLL13PA6NNM8 815 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 H0YCG3 227 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 MBTPS2O43462 519 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 B4GALT3O60512 393 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 GLP2RO95838 553 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 HSP90AA1P07900 732 aaKnown RBP20.58■□□□□ 0.89
CLN3-227ENST00000567495 HOXB8P17481 243 aaPredicted RBP20.58■□□□□ 0.89
CLN3-227ENST00000567495 PTPAQ15257 358 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 NT5DC1Q5TFE4 455 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 GSTCDQ8NEC7 633 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 POP1Q99575 1024 aaKnown RBP20.58■□□□□ 0.89
CLN3-227ENST00000567495 COLEC11Q9BWP8 271 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 FOXD4L1Q9NU39 408 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 LARSQ9P2J5 1176 aaKnown RBP20.58■□□□□ 0.89
CLN3-227ENST00000567495 ODF2LQ9ULJ1 636 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 SSX2IPQ9Y2D8 614 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 SRPRBQ9Y5M8 271 aaKnown RBP20.58■□□□□ 0.89
CLN3-227ENST00000567495 CLIC4Q9Y696 253 aa20.58■□□□□ 0.89
CLN3-227ENST00000567495 OR1G1P47890 313 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 STRN3Q13033 797 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 KCNC3Q14003 757 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 CLUL1Q15846 466 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 GJD3Q8N144 294 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 BCL7CQ8WUZ0 217 aaPredicted RBP20.57■□□□□ 0.88
CLN3-227ENST00000567495 CASP10Q92851 521 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 MIOSQ9NXC5 875 aa20.57■□□□□ 0.88
CLN3-227ENST00000567495 BARX2Q9UMQ3 279 aaPredicted RBP20.57■□□□□ 0.88
CLN3-227ENST00000567495 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.56■□□□□ 0.88
CLN3-227ENST00000567495 SFI1A8K8P3 1242 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 TXLNAP40222 546 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 EEF1DP3Q658K8 133 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 PPFIBP1Q86W92 1011 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 ADHFE1Q8IWW8 467 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 KCNN1Q92952 543 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 ACO2Q99798 780 aaKnown RBP20.56■□□□□ 0.88
CLN3-227ENST00000567495 SNTG2Q9NY99 539 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 KLK14Q9P0G3 267 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 CCDC39Q9UFE4 941 aa20.56■□□□□ 0.88
CLN3-227ENST00000567495 PRG3Q9Y2Y8 225 aaPredicted RBP20.56■□□□□ 0.88
CLN3-227ENST00000567495 SLC16A4O15374 487 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 CLASP2O75122 1294 aaKnown RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 RECQL4O94761 1208 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 PLCG1P19174 1290 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 MARCKSP29966 332 aaPredicted RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 SSTR3P32745 418 aaPredicted RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 CA8P35219 290 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 GRIN1Q05586 938 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 SLC39A14Q15043 492 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 KARSQ15046 597 aaKnown RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 TPRNQ4KMQ1 711 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 ANKRD54Q6NXT1 300 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 GPBP1Q86WP2 473 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 GPR65Q8IYL9 337 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 VN1R2Q8NFZ6 395 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 RAD54LQ92698 747 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 EMILIN2Q9BXX0 1053 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 PTPRHQ9HD43 1115 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 MRPL17Q9NRX2 175 aaKnown RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 BLOC1S4Q9NUP1 217 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 FBXO2Q9UK22 296 aaPredicted RBP20.55■□□□□ 0.88
CLN3-227ENST00000567495 USP20Q9Y2K6 914 aa20.55■□□□□ 0.88
CLN3-227ENST00000567495 MUC3AQ02505 3323 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 BRD1O95696 1058 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 SOD2P04179 222 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 EDN1P05305 212 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 URODP06132 367 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 THP07101 528 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 ABCD1P33897 745 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 DDIT3P35638 169 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 ZP2Q05996 745 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 RAD51AP2Q09MP3 1159 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 TUSC3Q13454 348 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 PTPN14Q15678 1187 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 ARSHQ5FYA8 562 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms