RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ASCC2Q9H1I8 757 aaPredicted RBP14.27□□□□□ -0.13
VPS4A-204ENST00000566354 DPH5Q9H2P9 285 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 GPBP1L1Q9HC44 474 aaPredicted RBP14.27□□□□□ -0.13
VPS4A-204ENST00000566354 OSGEPQ9NPF4 335 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 COL20A1Q9P218 1284 aa14.27□□□□□ -0.13
VPS4A-204ENST00000566354 CNOT8Q9UFF9 292 aaKnown RBP14.27□□□□□ -0.13
VPS4A-204ENST00000566354 GOLGA6L10A0A0M3HER8 536 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 UNCXA6NJT0 531 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 DDX3YO15523 660 aaKnown RBP14.26□□□□□ -0.13
VPS4A-204ENST00000566354 UBXN2AP68543 259 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 DR1Q01658 176 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 CYP4A11Q02928 519 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 IFFO1Q0D2I5 559 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 DRAP1Q14919 205 aaPredicted RBP14.26□□□□□ -0.13
VPS4A-204ENST00000566354 GPAT2Q6NUI2 795 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 RINT1Q6NUQ1 792 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 MYPNQ86TC9 1320 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 OLIG1Q8TAK6 271 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 EIF2AK1Q9BQI3 630 aaKnown RBP14.26□□□□□ -0.13
VPS4A-204ENST00000566354 TXLNGYQ9BZA5 131 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 A1CFQ9NQ94 594 aaKnown RBP14.26□□□□□ -0.13
VPS4A-204ENST00000566354 RNF146Q9NTX7 359 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 DNAJC12Q9UKB3 198 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 DAAM1Q9Y4D1 1078 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 GOLGA6L7A0A1B0GV03 622 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 FMO5P49326 533 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 HSD17B4P51659 736 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 HOOK3Q86VS8 718 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 CENPTQ96BT3 561 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 TLCD1Q96CP7 247 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 SEC16BQ96JE7 1060 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 PAIP2Q9BPZ3 127 aaKnown RBP14.26□□□□□ -0.13
VPS4A-204ENST00000566354 ERP44Q9BS26 406 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 SYT11Q9BT88 431 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 TEX13BQ9BXU2 312 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 BTBD7Q9P203 1132 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 ATP8A1Q9Y2Q0 1164 aa14.26□□□□□ -0.13
VPS4A-204ENST00000566354 FAM187AA6NFU0 413 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 RASSF9O75901 435 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 FAM13AO94988 1023 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 OAZ1P54368 228 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 DRG2P55039 364 aaKnown RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 HUNKP57058 714 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 DHX34Q14147 1143 aaKnown RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 GKAP1Q5VSY0 366 aaPredicted RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 DUPD1Q68J44 220 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 LBX2Q6XYB7 198 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 FASTKD5Q7L8L6 764 aaKnown RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 CACNA2D3Q8IZS8 1091 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 MYCT1Q8N699 235 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 ATP8B4Q8TF62 1192 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 P3H4Q92791 437 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 TATDN2Q93075 761 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 MS4A4AQ96JQ5 239 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 KLC4Q9NSK0 619 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 NR2E1Q9Y466 385 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 A0A0G2JMZ2 1700 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 ATP2A1O14983 1001 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 CYP3A4P08684 503 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 RPS6P62753 249 aaKnown RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 BYSLQ13895 437 aaKnown RBP14.25□□□□□ -0.13
VPS4A-204ENST00000566354 QPCTQ16769 361 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 DCAF12L1Q5VU92 463 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 NSMFQ6X4W1 530 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 SLC30A10Q6XR72 485 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 TRIM51Q9BSJ1 452 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 BCAS3Q9H6U6 928 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 ZDHHC18Q9NUE0 388 aa14.25□□□□□ -0.13
VPS4A-204ENST00000566354 RBBP6Q7Z6E9 1792 aaKnown RBP14.24□□□□□ -0.13
VPS4A-204ENST00000566354 ZMYM2Q9UBW7 1377 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 FRMPD4Q14CM0 1322 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 ANKRD62A6NC57 917 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 SFI1A8K8P3 1242 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 DCDC2CA8MYV0 355 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 NUDT17P0C025 328 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 ABCB4P21439 1286 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 TNFAIP3P21580 790 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 ZNF76P36508 570 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 PRPF4BQ13523 1007 aaKnown RBP14.24□□□□□ -0.13
VPS4A-204ENST00000566354 PPP2R5AQ15172 486 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 C1orf186Q6ZWK4 172 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 CPLX4Q7Z7G2 160 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 MCF2L2Q86YR7 1114 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 CYP2W1Q8TAV3 490 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 CCDC114Q96M63 670 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 HSD17B14Q9BPX1 270 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 TRIM31Q9BZY9 425 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 TUFT1Q9NNX1 390 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 RGL1Q9NZL6 768 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 FRMD4BQ9Y2L6 1034 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 UBE4BO95155 1302 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 EML1O00423 815 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 NMT1P30419 496 aaKnown RBP14.24□□□□□ -0.13
VPS4A-204ENST00000566354 GHRHRQ02643 423 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 MTA1Q13330 715 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 SPRYD7Q5W111 196 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 STXBP4Q6ZWJ1 553 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 HS2ST1Q7LGA3 356 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 TAX1BP1Q86VP1 789 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 SYTL5Q8TDW5 730 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms